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Report for CCDS14256.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14256.2 Public Homo sapiens X NYX 24 110 108 CCDS HistoryNCBI Gene:60506Re-query CCDS DB by CCDS ID:14256.2Re-query CCDS DB by GeneID:60506See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 14256.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342595.3 ENSP00000340328.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342595.3Link to Ensembl Protein Viewer:ENSP00000340328.3Re-query CCDS DB by Nucleotide ID:ENST00000342595Re-query CCDS DB by Protein ID:ENSP00000340328
Original member Current member EBI ENST00000378220.3 ENSP00000367465.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378220.3Link to Ensembl Protein Viewer:ENSP00000367465.2Re-query CCDS DB by Nucleotide ID:ENST00000378220Re-query CCDS DB by Protein ID:ENSP00000367465
Original member Current member NCBI NM_001378477.3 NP_001365406.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378477.3Link to Protein Sequence:NP_001365406.2Re-query CCDS DB by Nucleotide ID:NM_001378477Re-query CCDS DB by Protein ID:NP_001365406Link to BLAST:NP_001365406.2
Original member Current member NCBI NM_022567.3 NP_072089.2 Accepted alive Link to Nucleotide Sequence:NM_022567.3Link to Protein Sequence:NP_072089.2Re-query CCDS DB by Nucleotide ID:NM_022567Re-query CCDS DB by Protein ID:NP_072089Link to BLAST:NP_072089.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365406.2 476 Q9GZU5 476 100% 0 0
NP_072089.2 476 Q9GZU5 476 100% 0 0

Chromosomal Locations for CCDS 14256.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 41447905 41447926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41473491 41474899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGTTGGTCCTGCTTCTGCATGCGGTGGTCCTCGGCCTGCCCAGCGCCTGGGCCGTGGGGGCCTGCGCCC
GCGCTTGTCCCGCCGCCTGCGCCTGCAGCACCGTGGAGCGCGGCTGCTCGGTGCGCTGCGACCGCGCGGG
CCTCCTGCGGGTGCCGGCCGAGCTCCCGTGCGAGGCGGTCTCCATCGACCTGGACCGGAACGGCCTGCGC
TTCCTGGGCGAGCGAGCCTTCGGCACGCTGCCGTCCTTGCGCCGCCTGTCGCTGCGCCACAACAACCTGT
CCTTCATCACGCCCGGCGCCTTCAAGGGCCTGCCGCGCCTGGCTGAGCTGCGCCTGGCGCACAACGGCGA
CCTGCGCTACCTGCACGCGCGCACCTTCGCGGCGCTCAGCCGCCTGCGCCGCCTAGACCTAGCAGCCTGC
CGCCTCTTCAGCGTGCCCGAGCGCCTCCTGGCCGAACTGCCGGCCCTGCGCGAACTCGCCGCCTTCGACA
ACCTGTTCCGCCGCGTGCCGGGCGCGCTGCGCGGCCTGGCCAACCTGACGCACGCGCACCTGGAGCGCGG
CCGCATCGAGGCGGTGGCCTCCAGCTCGCTGCAGGGCCTGCGCCGCCTGCGCTCGCTCAGCCTGCAGGCC
AACCGCGTCCGTGCCGTGCACGCTGGCGCCTTCGGGGACTGTGGCGTCCTGGAGCATCTGCTGCTCAACG
ACAACCTGCTGGCCGAGCTCCCGGCCGACGCCTTCCGCGGCCTGCGGCGCCTGCGCACGCTCAACCTGGG
TGGCAACGCGCTGGACCGCGTGGCGCGCGCCTGGTTCGCTGACCTGGCCGAGCTCGAGCTGCTCTACCTG
GACCGCAACAGCATCGCCTTCGTGGAGGAGGGCGCCTTCCAGAACCTCTCGGGTCTCCTCGCGCTGCACC
TCAACGGCAACCGCCTCACCGTGCTCGCCTGGGTCGCCTTCCAGCCCGGCTTCTTCCTGGGCCGCCTCTT
CCTCTTCCGCAACCCGTGGTGCTGCGACTGCCGTCTGGAGTGGCTGAGGGACTGGATGGAGGGCTCCGGA
CGTGTCACCGACGTGCCGTGCGCCTCCCCGGGCTCCGTGGCCGGCCTGGACCTCAGCCAGGTGACCTTCG
GGCGCTCCTCCGATGGCCTCTGTGTGGACCCCGAGGAGCTGAACCTCACCACGTCCAGTCCAGGCCCGTC
CCCAGAACCAGCGGCCACCACCGTGAGCAGGTTCAGCAGCCTCCTCTCCAAGCTGCTGGCCCCGAGGGTC
CCGGTGGAGGAGGCGGCCAACACCACTGGGGGGCTGGCCAACGCCTCCCTGTCCGACAGCCTCTCCTCCC
GTGGGGTGGGAGGCGCGGGCCGGCAGCCCTGGTTTCTCCTCGCCTCTTGTCTCCTGCCCAGCGTGGCCCA
GCACGTGGTGTTTGGCCTGCAGATGGACTGA

Translation (476 aa):
MLVLLLHAVVLGLPSAWAVGACARACPAACACSTVERGCSVRCDRAGLLRVPAELPCEAVSIDLDRNGLR
FLGERAFGTLPSLRRLSLRHNNLSFITPGAFKGLPRLAELRLAHNGDLRYLHARTFAALSRLRRLDLAAC
RLFSVPERLLAELPALRELAAFDNLFRRVPGALRGLANLTHAHLERGRIEAVASSSLQGLRRLRSLSLQA
NRVRAVHAGAFGDCGVLEHLLLNDNLLAELPADAFRGLRRLRTLNLGGNALDRVARAWFADLAELELLYL
DRNSIAFVEEGAFQNLSGLLALHLNGNRLTVLAWVAFQPGFFLGRLFLFRNPWCCDCRLEWLRDWMEGSG
RVTDVPCASPGSVAGLDLSQVTFGRSSDGLCVDPEELNLTTSSPGPSPEPAATTVSRFSSLLSKLLAPRV
PVEEAANTTGGLANASLSDSLSSRGVGGAGRQPWFLLASCLLPSVAQHVVFGLQMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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