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Report for CCDS14123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14123.1 Public Homo sapiens X ARSF 24 110 108 CCDS HistoryNCBI Gene:416Re-query CCDS DB by CCDS ID:14123.1Re-query CCDS DB by GeneID:416See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14123.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359361.2 ENSP00000352319.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359361.2Link to Ensembl Protein Viewer:ENSP00000352319.2Re-query CCDS DB by Nucleotide ID:ENST00000359361Re-query CCDS DB by Protein ID:ENSP00000352319
Original member Current member EBI ENST00000381127.6 ENSP00000370519.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381127.6Link to Ensembl Protein Viewer:ENSP00000370519.1Re-query CCDS DB by Nucleotide ID:ENST00000381127Re-query CCDS DB by Protein ID:ENSP00000370519
Original member Current member NCBI NM_001201538.2 NP_001188467.1 Accepted alive Link to Nucleotide Sequence:NM_001201538.2Link to Protein Sequence:NP_001188467.1Re-query CCDS DB by Nucleotide ID:NM_001201538Re-query CCDS DB by Protein ID:NP_001188467Link to BLAST:NP_001188467.1
Original member Current member NCBI NM_001201539.2 NP_001188468.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001201539.2Link to Protein Sequence:NP_001188468.1Re-query CCDS DB by Nucleotide ID:NM_001201539Re-query CCDS DB by Protein ID:NP_001188468Link to BLAST:NP_001188468.1
Original member Current member NCBI NM_004042.5 NP_004033.2 Accepted alive Link to Nucleotide Sequence:NM_004042.5Link to Protein Sequence:NP_004033.2Re-query CCDS DB by Nucleotide ID:NM_004042Re-query CCDS DB by Protein ID:NP_004033Link to BLAST:NP_004033.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188467.1 590 P54793 590 100% 0 0
NP_001188468.1 590 P54793 590 100% 0 0
NP_004033.2 590 P54793 590 100% 0 0

Chromosomal Locations for CCDS 14123.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 3068101 3068111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 3072026 3072175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 3076548 3076669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 3080891 3081013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 3084243 3084666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 3089496 3089632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 3101087 3101221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 3103762 3103924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 3110128 3110252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 3112174 3112556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGAGGCCCAGGAGACCCTTGGTCTTCATGTCTTTGGTGTGTGCACTCTTGAACACATGCCAGGCACACA
GGGTGCATGACGACAAGCCTAATATTGTCCTAATCATGGTTGATGACCTGGGTATTGGAGATCTGGGCTG
CTACGGCAATGACACCATGAGGACGCCTCACATCGACCGCCTTGCCAGGGAAGGCGTGCGACTGACTCAG
CACATCTCTGCCGCCTCCCTCTGCAGCCCAAGCCGGTCCGCGTTCTTGACGGGAAGATACCCCATCCGAT
CAGGTATGGTTTCTAGTGGTAATAGACGTGTCATCCAAAATCTTGCAGTCCCCGCAGGCCTCCCTCTTAA
TGAGACAACACTTGCAGCCTTGCTAAAGAAGCAAGGATACAGCACGGGGCTTATAGGCAAATGGCACCAA
GGCTTGAACTGCGACTCCCGAAGTGACCAGTGCCACCATCCATATAATTATGGGTTTGACTACTACTATG
GCATGCCGTTCACTCTCGTTGACAGCTGCTGGCCGGACCCCTCTCGTAACACGGAATTAGCCTTTGAGAG
TCAGCTCTGGCTCTGTGTGCAGCTAGTTGCCATTGCCATCCTCACCCTAACCTTTGGGAAGCTGAGCGGC
TGGGTCTCTGTTCCCTGGCTCCTGATCTTCTCCATGATTCTGTTTATTTTCCTCTTGGGCTATGCTTGGT
TCTCCAGCCACACGTCCCCTTTATACTGGGACTGCCTCCTCATGCGGGGGCACGAGATCACGGAGCAGCC
CATGAAGGCTGAACGAGCTGGATCCATTATGGTGAAGGAAGCGATTTCCTTTTTAGAAAGGCACAGTAAG
GAAACTTTCCTTCTCTTTTTCTCCTTTCTTCACGTGCACACACCTCTCCCCACCACGGACGATTTCACTG
GCACCAGCAAGCATGGCTTGTATGGGGATAATGTGGAAGAGATGGACTCCATGGTGGGCAAGATTCTTGA
TGCTATCGATGATTTTGGCCTAAGGAACAACACCCTTGTCTACTTTACATCAGATCACGGAGGGCATTTG
GAAGCTAGGCGAGGGCATGCCCAACTTGGTGGATGGAATGGAATATACAAAGGTGGAAAAGGCATGGGGG
GCTGGGAAGGTGGAATCCGCGTCCCAGGAATTGTCCGATGGCCTGGAAAGGTACCAGCTGGACGGTTGAT
TAAGGAACCTACAAGTTTAATGGATATTTTACCAACTGTCGCATCAGTGTCAGGAGGAAGTCTCCCTCAG
GACAGGGTCATTGACGGCCGAGACCTCATGCCCTTGCTGCAGGGCAACGTCAGGCACTCGGAGCATGAAT
TTCTTTTCCACTACTGTGGCTCCTACCTGCACGCCGTGCGGTGGATCCCCAAGGACGACAGTGGGTCAGT
TTGGAAGGCTCACTATGTGACCCCGGTATTCCAGCCACCAGCTTCTGGTGGCTGCTATGTCACCTCATTA
TGCAGATGTTTCGGAGAACAGGTTACCTACCACAACCCCCCTCTGCTCTTCGATCTCTCCAGGGACCCCT
CAGAGTCCACACCCCTGACACCTGCCACAGAGCCCCTCCATGATTTTGTGATTAAAAAGGTGGCCAACGC
CCTGAAGGAACACCAGGAAACCATCGTGCCTGTGACCTACCAACTCTCAGAACTGAATCAGGGCAGGACG
TGGCTGAAGCCTTGCTGTGGGGTGTTCCCATTTTGTCTGTGTGACAAGGAAGAGGAAGTCTCTCAGCCTC
GGGGTCCTAACGAGAAGAGATAA

Translation (590 aa):
MRPRRPLVFMSLVCALLNTCQAHRVHDDKPNIVLIMVDDLGIGDLGCYGNDTMRTPHIDRLAREGVRLTQ
HISAASLCSPSRSAFLTGRYPIRSGMVSSGNRRVIQNLAVPAGLPLNETTLAALLKKQGYSTGLIGKWHQ
GLNCDSRSDQCHHPYNYGFDYYYGMPFTLVDSCWPDPSRNTELAFESQLWLCVQLVAIAILTLTFGKLSG
WVSVPWLLIFSMILFIFLLGYAWFSSHTSPLYWDCLLMRGHEITEQPMKAERAGSIMVKEAISFLERHSK
ETFLLFFSFLHVHTPLPTTDDFTGTSKHGLYGDNVEEMDSMVGKILDAIDDFGLRNNTLVYFTSDHGGHL
EARRGHAQLGGWNGIYKGGKGMGGWEGGIRVPGIVRWPGKVPAGRLIKEPTSLMDILPTVASVSGGSLPQ
DRVIDGRDLMPLLQGNVRHSEHEFLFHYCGSYLHAVRWIPKDDSGSVWKAHYVTPVFQPPASGGCYVTSL
CRCFGEQVTYHNPPLLFDLSRDPSESTPLTPATEPLHDFVIKKVANALKEHQETIVPVTYQLSELNQGRT
WLKPCCGVFPFCLCDKEEEVSQPRGPNEKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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