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Report for CCDS14033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14033.1 Public Homo sapiens 22 TCF20 24 110 108 CCDS HistoryNCBI Gene:6942Re-query CCDS DB by CCDS ID:14033.1Re-query CCDS DB by GeneID:6942See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14033.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359486.8 ENSP00000352463.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359486.8Link to Ensembl Protein Viewer:ENSP00000352463.3Re-query CCDS DB by Nucleotide ID:ENST00000359486Re-query CCDS DB by Protein ID:ENSP00000352463
Original member Current member EBI ENST00000677622.1 ENSP00000503828.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000677622.1Link to Ensembl Protein Viewer:ENSP00000503828.1Re-query CCDS DB by Nucleotide ID:ENST00000677622Re-query CCDS DB by Protein ID:ENSP00000503828
Original member Current member EBI ENST00000683686.1 ENSP00000508272.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683686.1Link to Ensembl Protein Viewer:ENSP00000508272.1Re-query CCDS DB by Nucleotide ID:ENST00000683686Re-query CCDS DB by Protein ID:ENSP00000508272
Original member Current member NCBI NM_001378418.1 NP_001365347.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378418.1Link to Protein Sequence:NP_001365347.1Re-query CCDS DB by Nucleotide ID:NM_001378418Re-query CCDS DB by Protein ID:NP_001365347Link to BLAST:NP_001365347.1
Original member Current member NCBI NM_005650.4 NP_005641.1 Accepted alive Link to Nucleotide Sequence:NM_005650.4Link to Protein Sequence:NP_005641.1Re-query CCDS DB by Nucleotide ID:NM_005650Re-query CCDS DB by Protein ID:NP_005641Link to BLAST:NP_005641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365347.1 1960 Q9UGU0-1 1960 100% 0 0
NP_005641.1 1960 Q9UGU0-1 1960 100% 0 0

Chromosomal Locations for CCDS 14033.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 42168653 42168736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42169847 42169896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42179609 42179702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42209651 42215305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5883 nt):
ATGCAGTCCTTTCGGGAGCAAAGCAGTTACCACGGAAACCAGCAAAGCTACCCACAGGAGGTACACGGCT
CATCCCGGCTAGAAGAGTTCAGCCCTCGTCAGGCCCAGATGTTCCAGAATTTTGGAGGTACAGGTGGCAG
TAGTGGCAGCAGTGGCAGTGGCAGTGGTGGTGGACGACGAGGAGCAGCAGCTGCTGCGGCAGCGATGGCT
AGCGAGACCTCTGGCCATCAAGGTTACCAGGGTTTCAGGAAAGAGGCTGGAGATTTTTACTACATGGCAG
GCAACAAAGACCCCGTGACTACAGGAACCCCACAGCCTCCTCAGCGAAGGCCTTCTGGGCCTGTGCAGAG
CTATGGACCCCCCCAGGGGAGCAGCTTTGGCAATCAGTATGGGAGTGAGGGTCATGTGGGCCAGTTTCAA
GCACAGCACTCTGGCCTTGGCGGTGTGTCACATTATCAGCAGGATTACACTGGGCCTTTCTCTCCAGGGA
GTGCTCAGTACCAACAGCAGGCTTCCAGCCAGCAGCAGCAGCAGCAAGTCCAGCAGTTGAGACAACAGCT
TTACCAGTCCCATCAGCCCCTGCCACAGGCCACTGGCCAACCAGCATCCAGCTCATCCCATCTACAGCCA
ATGCAGCGGCCCTCAACTCTGCCATCCTCTGCTGCTGGTTACCAGTTAAGAGTGGGTCAGTTTGGCCAAC
ACTATCAGTCTTCTGCTTCCTCCTCCTCCTCCTCCTCCTTCCCTTCACCACAGCGTTTTAGCCAGTCTGG
ACAGAGCTATGATGGCAGTTACAATGTGAATGCTGGATCTCAGTATGAAGGACACAATGTGGGTTCTAAT
GCACAGGCTTATGGAACACAATCCAATTACAGCTATCAGCCTCAATCTATGAAGAATTTTGAACAGGCAA
AGATTCCACAAGGGACCCAACAGGGGCAGCAGCAGCAGCAACCGCAGCAACAACAACACCCTTCTCAGCA
TGTGATGCAGTATACTAACGCTGCCACCAAGCTGCCCCTGCAAAGCCAAGTGGGGCAGTACAACCAGCCT
GAGGTTCCTGTGAGGTCCCCCATGCAGTTTCACCAGAACTTCAGCCCCATTTCTAACCCTTCTCCAGCTG
CCTCTGTGGTTCAGTCTCCAAGCTGTAGTTCTACCCCATCTCCTCTCATGCAGACTGGGGAGAATCTCCA
GTGTGGGCAAGGCAGTGTGCCTATGGGTTCCAGAAACAGAATTTTACAGTTAATGCCTCAACTCAGTCCA
ACCCCATCAATGATGCCCAGTCCTAATTCTCATGCTGCAGGCTTCAAAGGGTTTGGACTAGAAGGGGTAC
CAGAAAAGCGACTGACAGATCCTGGGTTGAGTAGTTTGAGTGCTCTGAGTACTCAAGTGGCCAATCTTCC
TAACACTGTCCAGCACATGTTACTTTCTGATGCCCTGACTCCTCAGAAGAAGACCTCCAAGAGGCCCTCA
TCTTCCAAGAAAGCAGATAGCTGCACAAATTCTGAAGGCTCCTCACAACCTGAAGAACAGCTGAAGTCCC
CTATGGCAGAGTCATTAGATGGAGGCTGCTCCAGCAGTTCAGAGGATCAAGGCGAGAGAGTGCGGCAACT
AAGTGGCCAGAGCACCAGCTCTGACACCACCTACAAGGGTGGAGCCTCTGAGAAAGCTGGCTCCTCACCG
GCACAAGGTGCTCAGAATGAACCCCCCAGACTCAATGCTAGTCCTGCCGCAAGAGAAGAGGCCACCTCAC
CAGGCGCTAAGGACATGCCATTGTCATCCGACGGGAACCCAAAGGTTAATGAGAAGACTGTTGGGGTGAT
TGTCTCCCGGGAAGCCATGACAGGTCGGGTAGAAAAGCCTGGTGGACAAGATAAAGGCTCCCAAGAGGAT
GATCCTGCAGCCACTCAAAGGCCACCTAGCAATGGTGGGGCAAAGGAAACCAGTCATGCATCACTTCCCC
AGCCAGAGCCTCCAGGAGGAGGAGGGAGCAAAGGAAACAAGAATGGCGATAACAACTCCAACCATAATGG
AGAAGGAAATGGCCAGAGTGGCCACTCTGCAGCGGGCCCTGGTTTTACGAGCAGAACTGAGCCTAGCAAA
TCTCCTGGAAGTCTGCGCTATAGTTACAAAGATAGTTTCGGGTCAGCCGTGCCACGAAATGTCAGTGGCT
TTCCTCAGTATCCTACAGGGCAAGAAAAGGGAGATTTCACTGGCCATGGGGAACGAAAGGGTAGAAATGA
AAAATTCCCAAGCCTCCTGCAGGAAGTGCTTCAGGGTTACCACCACCACCCTGACAGGAGATATTCTAGG
AGTACTCAAGAGCATCAGGGGATGGCTGGTAGCCTAGAAGGAACCACAAGGCCCAATGTCTTGGTTAGTC
AAACCAATGAATTAGCTAGCAGGGGCCTTCTGAACAAAAGCATTGGGTCTCTATTAGAAAATCCCCACTG
GGGCCCCTGGGAAAGGAAATCAAGCAGCACAGCTCCTGAAATGAAACAGATCAATTTGACTGACTATCCA
ATTCCCAGAAAGTTTGAAATAGAGCCTCAGTCATCAGCACATGAGCCTGGGGGTTCCCTCTCTGAAAGAA
GATCAGTGATCTGTGATATTTCTCCACTAAGACAGATTGTCAGGGACCCAGGGGCTCACTCACTGGGACA
CATGAGTGCCGACACCAGAATTGGGAGGAATGACCGTCTCAATCCAACTTTAAGTCAGTCGGTCATTCTT
CCTGGTGGTTTGGTGTCCATGGAAACCAAGCTGAAATCCCAGAGCGGGCAGATAAAAGAGGAAGACTTTG
AACAGTCTAAATCTCAAGCTAGTTTCAACAACAAGAAATCTGGAGACCACTGCCATCCTCCTAGCATCAA
GCATGAGTCTTACCGCGGCAATGCCAGCCCTGGAGCAGCAACCCATGATTCCCTTTCAGACTATGGCCCG
CAAGACAGCAGACCCACGCCAATGCGGCGGGTCCCTGGCAGAGTTGGTGGTCGGGAGGGCATGAGGGGTC
GGTCCCCTTCTCAATATCATGACTTTGCAGAAAAATTGAAAATGTCTCCTGGGCGGAGCAGAGGCCCAGG
GGGAGACCCTCATCACATGAATCCACACATGACCTTTTCAGAGAGGGCTAACCGGAGTTCTTTACACACT
CCCTTTTCTCCCAACTCAGAAACCCTGGCCTCTGCTTATCATGCAAATACTCGGGCTCATGCTTATGGGG
ACCCTAACGCAGGTTTGAATTCTCAGCTGCATTATAAGAGACAGATGTACCAACAGCAACCAGAGGAGTA
TAAAGACTGGAGCAGCGGTTCTGCTCAGGGAGTAATTGCTGCAGCACAGCACAGGCAGGAGGGGCCACGG
AAGAGTCCAAGGCAGCAGCAGTTTCTTGACAGAGTACGGAGCCCTCTGAAAAATGACAAAGATGGTATGA
TGTATGGCCCACCAGTGGGGACTTACCATGACCCCAGTGCCCAGGAGGCTGGGCGCTGCCTAATGTCTAG
TGATGGTCTGCCTAACAAGGGCATGGAATTAAAGCATGGCTCCCAGAAGTTACAAGAATCCTGTTGGGAT
CTTTCTCGGCAAACTTCTCCAGCCAAAAGCAGCGGTCCTCCAGGAATGTCCAGTCAAAAAAGGTATGGGC
CGCCCCATGAGACTGATGGACATGGACTAGCTGAGGCTACACAGTCATCCAAACCTGGTAGTGTTATGCT
GAGACTTCCAGGCCAGGAGGATCATTCTTCTCAAAACCCCTTAATCATGAGGAGGCGTGTTCGTTCTTTT
ATCTCTCCCATTCCCAGTAAGAGACAGTCACAAGATGTAAAGAACAGTAGCACTGAAGATAAAGGTCGCC
TCCTTCACTCATCAAAAGAAGGCGCTGATAAAGCATTCAATTCCTATGCCCATCTTTCTCACAGTCAGGA
TATCAAGTCTATCCCTAAGAGAGATTCCTCCAAGGACCTTCCAAGTCCAGATAGTAGAAACTGCCCTGCT
GTTACCCTCACAAGCCCTGCTAAGACCAAAATACTGCCCCCACGGAAAGGACGGGGATTGAAATTGGAAG
CTATAGTTCAGAAGATTACATCCCCAAATATTAGGAGGAGCGCATCTTCGAACAGTGCGGAGGCTGGGGG
AGACACGGTTACGCTTGATGATATACTGTCTTTGAAGAGTGGTCCTCCTGAAGGTGGGAGTGTTGCTGTT
CAGGATGCTGACATAGAGAAGAGAAAAGGTGAGGTGGCTTCGGACCTAGTCAGTCCAGCAAACCAGGAGT
TGCACGTAGAGAAACCTCTTCCAAGGTCTTCAGAAGAGTGGCGTGGCAGCGTGGATGACAAAGTGAAGAC
AGAGACACATGCAGAAACAGTTACTGCCGGAAAGGAACCCCCTGGTGCCATGACATCCACAACCTCACAG
AAGCCTGGTAGTAACCAAGGGAGACCAGATGGTTCCCTGGGTGGAACAGCACCTTTAATCTTTCCAGACT
CAAAGAATGTACCTCCAGTGGGCATATTGGCCCCTGAGGCAAACCCCAAGGCTGAAGAGAAGGAGAACGA
TACAGTGACGATTTCACCGAAGCAAGAGGGTTTCCCTCCAAAGGGATATTTCCCATCAGGAAAGAAGAAG
GGGAGACCCATTGGTAGTGTGAATAAGCAAAAGAAACAGCAGCAGCCACCGCCTCCACCCCCTCAGCCCC
CACAGATACCAGAAGGTTCTGCAGATGGAGAGCCAAAGCCAAAAAAACAGAGGCAAAGGAGGGAGAGAAG
GAAGCCTGGGGCCCAGCCGAGGAAGCGAAAAACCAAACAAGCAGTTCCCATTGTGGAACCCCAAGAACCT
GAGATCAAACTAAAATATGCCACCCAGCCACTGGATAAAACTGATGCCAAGAACAAGTCTTTTTACCCTT
ACATCCATGTAGTAAATAAGTGTGAACTTGGAGCCGTTTGTACAATCATCAATGCTGAGGAAGAAGAACA
GACCAAATTAGTGAGGGGCAGGAAGGGTCAGAGGTCACTGACCCCTCCACCTAGCAGCACTGAAAGCAAG
GCGCTCCCGGCCTCGTCCTTTATGCTGCAGGGACCTGTTGTGACAGAGTCTTCGGTTATGGGGCACCTGG
TTTGCTGTCTGTGTGGCAAGTGGGCCAGTTACCGGAACATGGGTGACCTCTTTGGACCTTTTTATCCCCA
AGATTATGCAGCCACTCTCCCGAAGAATCCACCTCCTAAGAGGGCCACAGAAATGCAGAGCAAAGTTAAG
GTACGGCACAAAAGTGCTTCTAATGGCTCCAAGACGGACACTGAGGAGGAGGAAGAGCAGCAGCAGCAGC
AGAAGGAGCAGAGAAGCCTGGCCGCACACCCCAGGTTTAAGCGGCGCCACCGCTCGGAAGACTGTGGTGG
AGGCCCTCGGTCCCTGTCCAGGGGGCTCCCTTGTAAAAAAGCAGCCACTGAGGGCAGCAGTGAAAAGACT
GTTTTGGACTCGAAGCCCTCCGTGCCCACCACTTCAGAAGGTGGCCCTGAGCTGGAGTTACAAATCCCTG
AACTACCTCTTGACAGCAATGAATTTTGGGTCCATGAGGGTTGTATTCTCTGGGCCAATGGAATCTACCT
GGTTTGTGGCAGGCTCTATGGCCTGCAGGAAGCGCTGGAAATAGCCAGAGAGATGAAATGTTCCCACTGC
CAGGAGGCAGGCGCCACCTTGGGCTGCTACAACAAAGGCTGCTCCTTCCGATACCATTACCCGTGTGCCA
TTGATGCAGATTGTTTGCTACATGAGGAGAACTTCTCGGTGAGGTGCCCTAAGCACAAGCCTCCCCTTCC
GTGCCCTCTCCCCCCCTTGCAGAACAAGACCGCGAAAGGCAGCCTCAGCACAGAGCAGTCGGAGCGGGGG
TGA

Translation (1960 aa):
MQSFREQSSYHGNQQSYPQEVHGSSRLEEFSPRQAQMFQNFGGTGGSSGSSGSGSGGGRRGAAAAAAAMA
SETSGHQGYQGFRKEAGDFYYMAGNKDPVTTGTPQPPQRRPSGPVQSYGPPQGSSFGNQYGSEGHVGQFQ
AQHSGLGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQQVQQLRQQLYQSHQPLPQATGQPASSSSHLQP
MQRPSTLPSSAAGYQLRVGQFGQHYQSSASSSSSSSFPSPQRFSQSGQSYDGSYNVNAGSQYEGHNVGSN
AQAYGTQSNYSYQPQSMKNFEQAKIPQGTQQGQQQQQPQQQQHPSQHVMQYTNAATKLPLQSQVGQYNQP
EVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQTGENLQCGQGSVPMGSRNRILQLMPQLSP
TPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALTPQKKTSKRPS
SSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQSTSSDTTYKGGASEKAGSSP
AQGAQNEPPRLNASPAAREEATSPGAKDMPLSSDGNPKVNEKTVGVIVSREAMTGRVEKPGGQDKGSQED
DPAATQRPPSNGGAKETSHASLPQPEPPGGGGSKGNKNGDNNSNHNGEGNGQSGHSAAGPGFTSRTEPSK
SPGSLRYSYKDSFGSAVPRNVSGFPQYPTGQEKGDFTGHGERKGRNEKFPSLLQEVLQGYHHHPDRRYSR
STQEHQGMAGSLEGTTRPNVLVSQTNELASRGLLNKSIGSLLENPHWGPWERKSSSTAPEMKQINLTDYP
IPRKFEIEPQSSAHEPGGSLSERRSVICDISPLRQIVRDPGAHSLGHMSADTRIGRNDRLNPTLSQSVIL
PGGLVSMETKLKSQSGQIKEEDFEQSKSQASFNNKKSGDHCHPPSIKHESYRGNASPGAATHDSLSDYGP
QDSRPTPMRRVPGRVGGREGMRGRSPSQYHDFAEKLKMSPGRSRGPGGDPHHMNPHMTFSERANRSSLHT
PFSPNSETLASAYHANTRAHAYGDPNAGLNSQLHYKRQMYQQQPEEYKDWSSGSAQGVIAAAQHRQEGPR
KSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPSAQEAGRCLMSSDGLPNKGMELKHGSQKLQESCWD
LSRQTSPAKSSGPPGMSSQKRYGPPHETDGHGLAEATQSSKPGSVMLRLPGQEDHSSQNPLIMRRRVRSF
ISPIPSKRQSQDVKNSSTEDKGRLLHSSKEGADKAFNSYAHLSHSQDIKSIPKRDSSKDLPSPDSRNCPA
VTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASSNSAEAGGDTVTLDDILSLKSGPPEGGSVAV
QDADIEKRKGEVASDLVSPANQELHVEKPLPRSSEEWRGSVDDKVKTETHAETVTAGKEPPGAMTSTTSQ
KPGSNQGRPDGSLGGTAPLIFPDSKNVPPVGILAPEANPKAEEKENDTVTISPKQEGFPPKGYFPSGKKK
GRPIGSVNKQKKQQQPPPPPPQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIVEPQEP
EIKLKYATQPLDKTDAKNKSFYPYIHVVNKCELGAVCTIINAEEEEQTKLVRGRKGQRSLTPPPSSTESK
ALPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNPPPKRATEMQSKVK
VRHKSASNGSKTDTEEEEEQQQQQKEQRSLAAHPRFKRRHRSEDCGGGPRSLSRGLPCKKAATEGSSEKT
VLDSKPSVPTTSEGGPELELQIPELPLDSNEFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHC
QEAGATLGCYNKGCSFRYHYPCAIDADCLLHEENFSVRCPKHKPPLPCPLPPLQNKTAKGSLSTEQSERG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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