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Report for CCDS13943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13943.1 Public Homo sapiens 22 C1QTNF6 24 110 108 CCDS HistoryNCBI Gene:114904Re-query CCDS DB by CCDS ID:13943.1Re-query CCDS DB by GeneID:114904See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337843.7 ENSP00000338812.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337843.7Link to Ensembl Protein Viewer:ENSP00000338812.2Re-query CCDS DB by Nucleotide ID:ENST00000337843Re-query CCDS DB by Protein ID:ENSP00000338812
Original member Current member EBI ENST00000397110.6 ENSP00000380299.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397110.6Link to Ensembl Protein Viewer:ENSP00000380299.2Re-query CCDS DB by Nucleotide ID:ENST00000397110Re-query CCDS DB by Protein ID:ENSP00000380299
Original member Current member NCBI NM_031910.4 NP_114116.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031910.4Link to Protein Sequence:NP_114116.3Re-query CCDS DB by Nucleotide ID:NM_031910Re-query CCDS DB by Protein ID:NP_114116Link to BLAST:NP_114116.3
Original member Current member NCBI NM_182486.2 NP_872292.1 Accepted alive Link to Nucleotide Sequence:NM_182486.2Link to Protein Sequence:NP_872292.1Re-query CCDS DB by Nucleotide ID:NM_182486Re-query CCDS DB by Protein ID:NP_872292Link to BLAST:NP_872292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114116.3 278 Q9BXI9-2 278 100% 0 0
NP_872292.1 278 Q9BXI9-2 278 100% 0 0

Chromosomal Locations for CCDS 13943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37182188 37182735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37185218 37185455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37188163 37188213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGCAGTGGCTCAGGGTCCGTGAGTCGCCTGGGGAGGCCACAGGACACAGGGTCACCATGGGGACAGCCG
CCCTGGGTCCCGTCTGGGCAGCGCTCCTGCTCTTTCTCCTGATGTGTGAGATCCCTATGGTGGAGCTCAC
CTTTGACAGAGCTGTGGCCAGCGGCTGCCAACGGTGCTGTGACTCTGAGGACCCCCTGGATCCTGCCCAT
GTATCCTCAGCCTCTTCCTCCGGCCGCCCCCACGCCCTGCCTGAGATCAGACCCTACATTAATATCACCA
TCCTGAAGGGTGACAAAGGGGACCCAGGCCCAATGGGCCTGCCAGGGTACATGGGCAGGGAGGGTCCCCA
AGGGGAGCCTGGCCCTCAGGGCAGCAAGGGTGACAAGGGGGAGATGGGCAGCCCCGGCGCCCCGTGCCAG
AAGCGCTTCTTCGCCTTCTCAGTGGGCCGCAAGACGGCCCTGCACAGCGGCGAGGACTTCCAGACGCTGC
TCTTCGAAAGGGTCTTTGTGAACCTTGATGGGTGCTTTGACATGGCGACCGGCCAGTTTGCTGCTCCCCT
GCGTGGCATCTACTTCTTCAGCCTCAATGTGCACAGCTGGAATTACAAGGAGACGTACGTGCACATTATG
CATAACCAGAAAGAGGCTGTCATCCTGTACGCGCAGCCCAGCGAGCGCAGCATCATGCAGAGCCAGAGTG
TGATGCTGGACCTGGCCTACGGGGACCGCGTCTGGGTGCGGCTCTTCAAGCGCCAGCGCGAGAACGCCAT
CTACAGCAACGACTTCGACACCTACATCACCTTCAGCGGCCACCTCATCAAGGCCGAGGACGACTGA

Translation (278 aa):
MQWLRVRESPGEATGHRVTMGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCCDSEDPLDPAH
VSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEPGPQGSKGDKGEMGSPGAPCQ
KRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMATGQFAAPLRGIYFFSLNVHSWNYKETYVHIM
HNQKEAVILYAQPSERSIMQSQSVMLDLAYGDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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