NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13904.1 Public Homo sapiens 22 RFPL3 24 110 108 CCDS HistoryNCBI Gene:10738Re-query CCDS DB by CCDS ID:13904.1Re-query CCDS DB by GeneID:10738See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13904.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397468.5 ENSP00000380609.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397468.5Link to Ensembl Protein Viewer:ENSP00000380609.1Re-query CCDS DB by Nucleotide ID:ENST00000397468Re-query CCDS DB by Protein ID:ENSP00000380609
Original member Current member NCBI NM_006604.2 NP_006595.1 Accepted alive Link to Nucleotide Sequence:NM_006604.2Link to Protein Sequence:NP_006595.1Re-query CCDS DB by Nucleotide ID:NM_006604Re-query CCDS DB by Protein ID:NP_006595Link to BLAST:NP_006595.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006595.1 288 O75679-2 288 100% 0 0

Chromosomal Locations for CCDS 13904.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 32358159 32358444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32360252 32360832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGCTGCACTCTTCCAAGAAGCAAGCAGCTGTCCCGTCTGCTCAGACTATCTGGAAAAACCAATGTCCC
TGGAGTGTGGATGCACCGTCTGCCTCAAGTGCATCAATTCGCTGCAGAAGGAGCCCCATGGGGAGGATCT
GCTTTGCTGTTGCTGTTCCATGGTCTCTCAGAGGAACAAAATCAGGCCCAATCGGCAGCTAGAGAGGCTG
GTTTCCCACATCAAGGAACTGGAGCCCAAGCTGAAGAAGATTCTACAGATGAACCCAAGGATGCGGAAGT
TCCAAGTGGATATGACCTTGGATGCCGACACAGCCAACAACTTCCTCCTCATTTCTGACGACCTCAGGAG
CGTCCGAAGTGGGCTCATCACACAGAATCGGCAAGACCTTGCCGAGAGATTTGACGTGTCCGTTTGCATC
CTGGGCTCCCCTCGCTTTACCTGTGGCCGCCACTACTGGGAGGTGGACGTGGGAACAAGCACAGAATGGG
ACCTGGGAGTCTGCAGAGAATCTGTTCACTGCAAAGGGAAGATCCAGCTGACCACAGAGCTTGGATTCTG
GACTGTGAGTTTGAGGGATGGAAGCCGCCTCTCTGCCAGCACGGTGCCGCTGACTTTCCTCTTAGTAGAC
CGCAAGTTACAGCGAGTGGGGATTTTTCTGGATATGGGCATGCAGAACGTTTCCTTTTTTGATGCTGAAA
GTGGTTCCCATGTCTATACATTCAGGAGCGTCTCTGCTGAGGAGCCACTGCGCCCATTTTTGGCTCCTTC
AATTCCACCTAATGGTGATCAAGGTGTCTTGAGCATCTGTCCTTTGATGAACTCAGGCACTACTGATGCT
CCAGTCCGTCCTGGGGAGGCCAAATAA

Translation (288 aa):
MAALFQEASSCPVCSDYLEKPMSLECGCTVCLKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERL
VSHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCI
LGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVD
RKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICPLMNSGTTDA
PVRPGEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH