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Report for CCDS13559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13559.1 Public Homo sapiens 20 PCMTD2 24 110 108 CCDS HistoryNCBI Gene:55251Re-query CCDS DB by CCDS ID:13559.1Re-query CCDS DB by GeneID:55251See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308824.11 ENSP00000307854.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308824.11Link to Ensembl Protein Viewer:ENSP00000307854.6Re-query CCDS DB by Nucleotide ID:ENST00000308824Re-query CCDS DB by Protein ID:ENSP00000307854
Original member Current member NCBI NM_018257.3 NP_060727.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018257.3Link to Protein Sequence:NP_060727.2Re-query CCDS DB by Nucleotide ID:NM_018257Re-query CCDS DB by Protein ID:NP_060727Link to BLAST:NP_060727.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060727.2 361 Q9NV79-1 361 100% 0 0

Chromosomal Locations for CCDS 13559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 64259966 64260272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64264429 64264531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64265258 64265429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64267887 64268010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64273221 64273600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGGCGGTGCTGTGAGTGCTGGTGAAGACAATGATGAGCTGATAGATAATTTGAAAGAAGCACAGTATA
TCCGGACTGAGCTGGTAGAGCAGGCTTTCAGAGCTATCGATCGTGCAGACTATTATCTTGAAGAATTTAA
AGAAAATGCTTATAAAGACTTGGCATGGAAGCATGGAAACATTCACCTCTCAGCCCCGTGCATCTACTCG
GAGGTGATGGAAGCCCTAGATCTGCAGCCTGGACTCTCGTTTCTGAACCTGGGCAGTGGCACTGGGTATC
TCAGCTCCATGGTGGGCCTCATTCTAGGTCCTTTTGGTGTGAACCATGGGGTGGAACTTCACTCAGATGT
GATAGAGTATGCAAAGCAGAAACTGGACTTCTTCATCAGAACAAGTGATAGTTTTGACAAGTTTGACTTC
TGTGAACCTTCCTTTGTTACTGGGAATTGCCTGGAGATTTCTCCGGATTGTTCTCAGTATGATCGTGTAT
ACTGTGGGGCTGGCGTGCAGAAAGAGCATGAAGAGTACATGAAGAATCTTCTCAAAGTGGGAGGGATCCT
TGTCATGCCACTGGAAGAGAAGTTGACTAAGATAACACGCACAGGTCCTTCAGCTTGGGAAACCAAAAAG
ATTCTTGCTGTTTCTTTTGCTCCTCTGATCCAGCCCTGCCATTCAGAGTCAGGAAAATCAAGACTTGTCC
AGTTACCACCAGTGGCAGTTCGCAGCCTCCAGGACTTGGCTCGCATCGCCATCCGGGGCACCATTAAAAA
GATTATTCATCAGGAAACTGTGAGCAAAAACGGAAACGGACTAAAGAACACCCCCAGGTTTAAACGAAGG
AGAGTTCGCCGCCGTCGAATGGAAACGATTGTCTTTTTGGACAAAGAAGTCTTTGCCAGTCGGATTTCCA
ACCCCTCAGATGACAACAGCTGTGAAGACTTGGAAGAGGAACGGAGGGAAGAAGAAGAGAAGACCCCGCC
GGAAACAAAGCCAGACCCCCCAGTGAACTTCCTACGCCAGAAGGTCCTGAGCCTCCCTCTGCCAGATCCC
CTGAAATACTACTTGCTTTATTACAGAGAAAAATAA

Translation (361 aa):
MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGNIHLSAPCIYS
EVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEYAKQKLDFFIRTSDSFDKFDF
CEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNLLKVGGILVMPLEEKLTKITRTGPSAWETKK
ILAVSFAPLIQPCHSESGKSRLVQLPPVAVRSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRR
RVRRRRMETIVFLDKEVFASRISNPSDDNSCEDLEEERREEEEKTPPETKPDPPVNFLRQKVLSLPLPDP
LKYYLLYYREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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