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Report for CCDS13305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13305.1 Public Homo sapiens 20 RALGAPB 24 110 108 CCDS HistoryNCBI Gene:57148Re-query CCDS DB by CCDS ID:13305.1Re-query CCDS DB by GeneID:57148See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262879.11 ENSP00000262879.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262879.11Link to Ensembl Protein Viewer:ENSP00000262879.6Re-query CCDS DB by Nucleotide ID:ENST00000262879Re-query CCDS DB by Protein ID:ENSP00000262879
Original member Current member EBI ENST00000397040.5 ENSP00000380233.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397040.5Link to Ensembl Protein Viewer:ENSP00000380233.1Re-query CCDS DB by Nucleotide ID:ENST00000397040Re-query CCDS DB by Protein ID:ENSP00000380233
Original member Current member NCBI NM_001282917.2 NP_001269846.1 Accepted alive Link to Nucleotide Sequence:NM_001282917.2Link to Protein Sequence:NP_001269846.1Re-query CCDS DB by Nucleotide ID:NM_001282917Re-query CCDS DB by Protein ID:NP_001269846Link to BLAST:NP_001269846.1
Original member Current member NCBI NM_020336.4 NP_065069.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020336.4Link to Protein Sequence:NP_065069.1Re-query CCDS DB by Nucleotide ID:NM_020336Re-query CCDS DB by Protein ID:NP_065069Link to BLAST:NP_065069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269846.1 1494 Q86X10-1 1494 100% 0 0
NP_065069.1 1494 Q86X10-1 1494 100% 0 0

Chromosomal Locations for CCDS 13305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 38488433 38488618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38492930 38493132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38497353 38497516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38499447 38499633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38509077 38509208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38516192 38516370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38517506 38517654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38517784 38518000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38521497 38521698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38524778 38524945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38525404 38525518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38525895 38526042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38531167 38531231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38532730 38532859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38535074 38535207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38539776 38539958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38541041 38541192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38546243 38546430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38548689 38548795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38551071 38551223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38553867 38554076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38558295 38558453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38562532 38562697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38565359 38565478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38567096 38567232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38569888 38569996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38570769 38570847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38574150 38574298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38574774 38574967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4485 nt):
ATGTACTCTGAGTGGAGGTCACTGCATTTGGTGATTCAGAATGATCAAGGCCATACCAGTGTGCTGCACA
GCTATCCAGAGAGCGTTGGACGAGAGGTGGCAAATGCTGTAGTCCGTCCTCTTGGGCAGGTGTTAGGTAC
CCCTTCAGTGGCTGGTAGTGAGAATTTGTTAAAAACTGACAAAGAAGTAAAATGGACCATGGAAGTAATT
TGCTATGGACTGACCCTTCCATTGGATGGAGAGACTGTAAAATATTGCGTTGATGTATATACAGACTGGA
TTATGGCTTTAGTGTTGCCAAAAGATTCTATTCCATTGCCAGTTATTAAAGAGCCTAATCAATATGTTCA
AACTATACTAAAACACCTACAGAATCTTTTTGTACCAAGACAGGAACAGGGTTCCAGTCAGATTCGACTA
TGCTTACAGGTCCTGAGAGCCATTCAGAAACTGGCCCGTGAGTCATCTCTCATGGCCCGAGAAACTTGGG
AAGTCTTACTGTTGTTTCTTCTGCAGATTAACGACATACTTCTGGCCCCACCAACTGTTCAAGGTGGCAT
TGCTGAGAATCTAGCAGAGAAGTTGATTGGTGTTCTCTTTGAGGTGTGGTTACTAGCTTGTACTCGGTGC
TTCCCAACACCTCCTTATTGGAAAACAGCCAAGGAGATGGTGGCTAACTGGAGGCATCACCCAGCAGTGG
TGGAGCAGTGGAGCAAGGTCATTTGTGCACTCACTTCCAGATTGCTACGCTTTACATATGGTCCTTCATT
TCCTGCATTTAAAGTTCCCGATGAAGATGCCAGTCTGATCCCTCCAGAAATGGATAATGAGTGTGTTGCA
CAGACATGGTTTCGCTTTTTACACATGTTAAGTAATCCTGTGGATTTGAGTAACCCAGCTATTATAAGCT
CTACTCCCAAATTTCAGGAACAGTTCTTGAATGTGAGCGGAATGCCGCAAGAATTGAATCAGTATCCCTG
CCTTAAACATCTGCCTCAAATATTTTTTCGTGCCATGCGTGGAATCAGCTGTCTGGTGGATGCATTCTTA
GGTATTTCTAGACCCCGATCAGACAGTGCTCCCCCAACACCCGTGAATAGATTAAGTATGCCTCAAAGTG
CTGCTGTCAGTACCACCCCCCCACATAACCGGAGGCACCGGGCTGTTACTGTGAATAAGGCCACCATGAA
GACAAGCACAGTTAGTACTGCTCATGCCTCTAAAGTTCAGCACCAGACGTCCTCCACCTCTCCTCTGTCA
AGTCCAAATCAGACTAGTTCAGAACCCCGGCCACTGCCTGCCCCTCGGAGACCAAAGGTTAACAGCATCT
TGAATCTCTTTGGATCATGGTTATTTGATGCAGCATTTGTTCACTGTAAACTTCATAATGGGATAAACAG
AGACAGCAGCATGACTGCCATTACAACACAAGCTAGCATGGAGTTTCGACGGAAAGGGTCACAAATGTCC
ACAGACACCATGGTTTCCAATCCTATGTTTGATGCAAGTGAATTTCCTGATAACTATGAAGCAGGAAGAG
CTGAGGCTTGTGGGACACTGTGTAGGATTTTTTGTAGCAAGAAGACTGGAGAAGAGATTCTGCCAGCTTA
TTTATCCAGATTTTACATGCTTTTAATTCAAGGTTTGCAGATAAATGATTATGTGTGCCATCCTGTCTTG
GCCAGCGTTATTCTAAACTCTCCTCCTTTGTTCTGCTGTGACTTGAAAGGGATTGATGTTGTGGTTCCTT
ACTTTATTTCAGCTCTTGAAACCATTTTGCCTGACAGAGAACTCTCAAAATTCAAAAGCTATGTAAATCC
AACAGAATTGCGAAGATCCTCCATTAATATCCTGCTTTCTTTGTTGCCCCTCCCTCATCATTTTGGCACA
GTCAAATCTGAGGTGGTCCTGGAAGGAAAGTTTAGTAACGATGACAGCTCTTCTTATGATAAACCAATAA
CTTTTCTGTCCCTGAAGTTGAGACTTGTGAATATATTAATAGGTGCCTTGCAAACTGAAACGGACCCCAA
CAACACCCAAATGATATTAGGGGCAATGTTAAATATTGTTCAAGATTCAGCACTTTTGGAAGCCATTGGT
TGCCAGATGGAGATGGGTGGTGGAGAAAATAACCTGAAGAGTCATAGTCGCACCAATAGTGGTATTAGTT
CAGCAAGTGGTGGAAGCACGGAGCCCACGACTCCCGATAGTGAGAGACCTGCTCAAGCTCTCTTAAGAGA
TTATGCTCTTAATACAGATTCAGCTGCTGGGCTCCTGATTCGCAGCATTCATCTCGTCACCCAAAGACTC
AACTCCCAGTGGCGCCAAGACATGAGCATATCACTGGCAGCTCTAGAGCTCCTCTCTGGCCTTGCAAAGG
TAAAAGTGATGGTTGACTCAGGAGACCGGAAGCGAGCCATCAGTTCTGTGTGCACCTACATTGTTTATCA
GTGTAGTCGGCCAGCTCCTTTACACTCCAGGGATCTGCACTCCATGATAGTGGCAGCTTTTCAGTGTCTC
TGTGTCTGGCTGACAGAGCACCCTGATATGCTTGATGAAAAGGACTGCCTTAAGGAAGTACTGGAGATTG
TGGAACTGGGTATCTCAGGAAGTAAGTCCAAGAACAATGAGCAAGAGGTCAAGTACAAAGGAGATAAGGA
GCCAAACCCTGCATCTATGAGGGTAAAGGATGCTGCTGAAGCCACCCTAACATGCATTATGCAGTTGCTC
GGCGCATTTCCTTCACCTAGTGGTCCTGCCTCTCCTTGTAGTCTTGTGAATGAGACCACTTTGATTAAAT
ACTCCAGGCTGCCAACCATAAACAAGCATAGTTTCCGGTACTTTGTCTTGGATAACAGTGTCATCCTGGC
AATGCTGGAACAACCTCTTGGAAATGAGCAGAATGATTTTTTCCCCTCTGTCACTGTGCTGGTCCGGGGA
ATGTCTGGAAGACTTGCTTGGGCACAACAGCTTTGTCTTTTACCCAGAGGAGCAAAAGCAAATCAGAAGC
TTTTTGTACCTGAACCTCGCCCAGTTCCTAAAAATGACGTTGGATTTAAATATTCTGTGAAACATCGGCC
ATTTCCTGAAGAGGTGGACAAGATTCCTTTTGTGAAAGCAGATCTCAGCATTCCAGATTTGCATGAAATA
GTCACTGAAGAATTAGAAGAGAGACACGAAAAATTAAGGAGTGGCATGGCCCAGCAGATTGCTTATGAAA
TACACCTTGAGCAACAGAGTGAGGAGGAATTGCAGAAGAGAAGTTTTCCTGACCCAGTTACGGATTGCAA
GCCCCCGCCTCCTGCCCAGGAATTCCAAACAGCCCGCCTTTTTCTCTCACACTTTGGATTTTTGTCCTTA
GAAGCACTGAAGGAACCTGCAAATAGTCGTCTACCTCCTCACCTTATTGCACTTGATTCCACGATACCTG
GATTTTTTGATGACATTGGGTATCTGGATCTCTTGCCATGTCGTCCTTTTGACACAGTTTTTATTTTCTA
TATGAAGCCAGGTCAGAAAACGAACCAAGAGATTTTAAAGAATGTGGAGTCTTCCAGAACTGTTCAGCCA
CATTTCCTAGAATTTTTGCTTTCCCTTGGCTGGTCAGTAGATGTGGGCAGACACCCTGGTTGGACTGGGC
ATGTTTCTACCAGTTGGTCTATTAATTGTTGTGATGATGGTGAAGGATCTCAACAAGAAGTGATTTCCTC
TGAAGATATTGGAGCTAGCATTTTCAATGGACAGAAGAAGGTGCTGTATTATGCTGATGCCCTTACAGAA
ATTGCTTTTGTGGTTCCTTCTCCTGTGGAGTCCTTAACTGATTCATTGGAAAGTAACATCTCGGACCAAG
ATAGTGATTCAAATATGGATCTTATGCCAGGAATTCTGAAACAGCCATCCCTGACACTTGAGCTTTTCCC
CAATCATACAGACAATCTTAATTCCTCACAGAGGCTCAGTCCCAGTTCCAGAATGAGGAAGCTGCCTCAG
GGTCGCCCTGTTCCTCCCCTTGGACCTGAGACAAGAGTTTCTGTAGTCTGGGTGGAACGCTATGATGATA
TAGAAAACTTTCCCCTCTCAGAGCTGATGACAGAGATCAGTACTGGTGTGGAAACTACTGCAAATAGTAG
CACTTCACTGAGATCTACAACTCTTGAAAAAGAAGTTCCTGTCATCTTCATCCACCCTTTAAACACTGGA
TTATTCCGGATAAAAATTCAAGGAGCCACTGGAAAATTTAATATGGTCATCCCTCTTGTGGATGGGATGA
TTGTCAGCAGGCGAGCTCTTGGCTTTCTGGTGAGGCAGACTGTAATTAACATTTGTAGAAGAAAGAGACT
GGAAAGTGACTCCTACAGTCCCCCCCATGTCCGCCGGAAACAGAAAATCACCGACATTGTCAACAAGTAC
CGGAACAAGCAGCTGGAGCCAGAGTTTTATACTTCACTTTTCCAGGAGGTTGGACTCAAGAACTGCAGTT
CTTAG

Translation (1494 aa):
MYSEWRSLHLVIQNDQGHTSVLHSYPESVGREVANAVVRPLGQVLGTPSVAGSENLLKTDKEVKWTMEVI
CYGLTLPLDGETVKYCVDVYTDWIMALVLPKDSIPLPVIKEPNQYVQTILKHLQNLFVPRQEQGSSQIRL
CLQVLRAIQKLARESSLMARETWEVLLLFLLQINDILLAPPTVQGGIAENLAEKLIGVLFEVWLLACTRC
FPTPPYWKTAKEMVANWRHHPAVVEQWSKVICALTSRLLRFTYGPSFPAFKVPDEDASLIPPEMDNECVA
QTWFRFLHMLSNPVDLSNPAIISSTPKFQEQFLNVSGMPQELNQYPCLKHLPQIFFRAMRGISCLVDAFL
GISRPRSDSAPPTPVNRLSMPQSAAVSTTPPHNRRHRAVTVNKATMKTSTVSTAHASKVQHQTSSTSPLS
SPNQTSSEPRPLPAPRRPKVNSILNLFGSWLFDAAFVHCKLHNGINRDSSMTAITTQASMEFRRKGSQMS
TDTMVSNPMFDASEFPDNYEAGRAEACGTLCRIFCSKKTGEEILPAYLSRFYMLLIQGLQINDYVCHPVL
ASVILNSPPLFCCDLKGIDVVVPYFISALETILPDRELSKFKSYVNPTELRRSSINILLSLLPLPHHFGT
VKSEVVLEGKFSNDDSSSYDKPITFLSLKLRLVNILIGALQTETDPNNTQMILGAMLNIVQDSALLEAIG
CQMEMGGGENNLKSHSRTNSGISSASGGSTEPTTPDSERPAQALLRDYALNTDSAAGLLIRSIHLVTQRL
NSQWRQDMSISLAALELLSGLAKVKVMVDSGDRKRAISSVCTYIVYQCSRPAPLHSRDLHSMIVAAFQCL
CVWLTEHPDMLDEKDCLKEVLEIVELGISGSKSKNNEQEVKYKGDKEPNPASMRVKDAAEATLTCIMQLL
GAFPSPSGPASPCSLVNETTLIKYSRLPTINKHSFRYFVLDNSVILAMLEQPLGNEQNDFFPSVTVLVRG
MSGRLAWAQQLCLLPRGAKANQKLFVPEPRPVPKNDVGFKYSVKHRPFPEEVDKIPFVKADLSIPDLHEI
VTEELEERHEKLRSGMAQQIAYEIHLEQQSEEELQKRSFPDPVTDCKPPPPAQEFQTARLFLSHFGFLSL
EALKEPANSRLPPHLIALDSTIPGFFDDIGYLDLLPCRPFDTVFIFYMKPGQKTNQEILKNVESSRTVQP
HFLEFLLSLGWSVDVGRHPGWTGHVSTSWSINCCDDGEGSQQEVISSEDIGASIFNGQKKVLYYADALTE
IAFVVPSPVESLTDSLESNISDQDSDSNMDLMPGILKQPSLTLELFPNHTDNLNSSQRLSPSSRMRKLPQ
GRPVPPLGPETRVSVVWVERYDDIENFPLSELMTEISTGVETTANSSTSLRSTTLEKEVPVIFIHPLNTG
LFRIKIQGATGKFNMVIPLVDGMIVSRRALGFLVRQTVINICRRKRLESDSYSPPHVRRKQKITDIVNKY
RNKQLEPEFYTSLFQEVGLKNCSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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