NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13258.1 Public Homo sapiens 20 ERGIC3 24 110 108 CCDS HistoryNCBI Gene:51614Re-query CCDS DB by CCDS ID:13258.1Re-query CCDS DB by GeneID:51614See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357394.8 ENSP00000349970.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357394.8Link to Ensembl Protein Viewer:ENSP00000349970.4Re-query CCDS DB by Nucleotide ID:ENST00000357394Re-query CCDS DB by Protein ID:ENSP00000349970
Original member Current member NCBI NM_198398.2 NP_938408.1 Accepted alive Link to Nucleotide Sequence:NM_198398.2Link to Protein Sequence:NP_938408.1Re-query CCDS DB by Nucleotide ID:NM_198398Re-query CCDS DB by Protein ID:NP_938408Link to BLAST:NP_938408.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938408.1 388 Q9Y282-3 388 100% 0 0

Chromosomal Locations for CCDS 13258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35542098 35542185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35542323 35542393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35542513 35542600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35542822 35542941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35547412 35547505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35548509 35548674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35548808 35548865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35554372 35554386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35555044 35555075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35556033 35556129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35556207 35556271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35556973 35557109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35557194 35557249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35557425 35557504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGA
CCTGCGGGGGCGCCACCGTGACCATTGTCAGTGGCCTTCTCATGCTGCTACTGTTCCTGTCCGAGCTGCA
GTATTACCTCACCACGGAGGTGCATCCTGAGCTCTACGTGGACAAGTCGCGGGGAGATAAACTGAAGATC
AACATCGATGTACTTTTTCCGCACATGCCTTGTGCCTATCTGAGTATTGATGCCATGGATGTGGCCGGAG
AACAGCAGCTGGATGTGGAACACAACCTGTTCAAGCAACGACTAGATAAAGATGGCATCCCCGTGAGCTC
AGAGGCTGAGCGGCATGAGCTTGGGAAAGTCGAGGTGACGGTGTTTGACCCTGACTCCCTGGACCCTGAT
CGCTGTGAGAGCTGCTATGGTGCTGAGGCAGAAGATATCAAGTGCTGTAACACCTGTGAAGATGTGCGGG
AGGCATATCGCCGTAGAGGCTGGGCCTTCAAGAACCCAGATACTATTGAGCAGTGCCGGCGAGAGGGCTT
CAGCCAGAAGATGCAGGAGCAGAAGAATGAAGGCTGCCAGGTGTATGGCTTCTTGGAAGTCAATAAGGTG
GCCGGAAACTTCCACTTTGCCCCTGGGAAGAGCTTCCAGCAGTCCCATGTGCACGTACATGCTGTGGAGA
TCCATGACTTGCAGAGCTTTGGCCTTGACAACATCAACATGACCCACTACATCCAGCACCTGTCATTTGG
GGAGGACTATCCAGGCATTGTGAACCCCCTGGACCACACCAATGTCACTGCGCCCCAAGCCTCCATGATG
TTCCAGTACTTTGTGAAGGTGGTGCCCACTGTGTACATGAAGGTGGACGGAGAGGTACTGAGGACAAATC
AGTTCTCTGTGACCAGACATGAGAAGGTTGCCAATGGGCTGTTGGGCGACCAAGGCCTTCCCGGAGTCTT
CGTCCTCTATGAGCTCTCGCCCATGATGGTGAAGCTGACGGAGAAGCACAGGTCCTTCACCCACTTCCTG
ACAGGTGTGTGCGCCATCATTGGGGGCATGTTCACAGTGGCTGGACTCATCGATTCGCTCATCTACCACT
CAGCACGAGCCATCCAGAAGAAAATTGATCTAGGGAAGACAACGTAG

Translation (388 aa):
MEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKI
NIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSSEAERHELGKVEVTVFDPDSLDPD
RCESCYGAEAEDIKCCNTCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKV
AGNFHFAPGKSFQQSHVHVHAVEIHDLQSFGLDNINMTHYIQHLSFGEDYPGIVNPLDHTNVTAPQASMM
FQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFL
TGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH