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Report for CCDS13227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13227.1 Public Homo sapiens 20 ZNF341 24 110 108 CCDS HistoryNCBI Gene:84905Re-query CCDS DB by CCDS ID:13227.1Re-query CCDS DB by GeneID:84905See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342427.6 ENSP00000344308.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342427.6Link to Ensembl Protein Viewer:ENSP00000344308.2Re-query CCDS DB by Nucleotide ID:ENST00000342427Re-query CCDS DB by Protein ID:ENSP00000344308
Original member Current member NCBI NM_032819.5 NP_116208.3 Accepted alive Link to Nucleotide Sequence:NM_032819.5Link to Protein Sequence:NP_116208.3Re-query CCDS DB by Nucleotide ID:NM_032819Re-query CCDS DB by Protein ID:NP_116208Link to BLAST:NP_116208.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116208.3 847 Q9BYN7-2 847 100% 0 0

Chromosomal Locations for CCDS 13227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 33732022 33732052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33740902 33741012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33745103 33745299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33748923 33749072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33753172 33753423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33757148 33757322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33758716 33758806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33761862 33762055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33766851 33767041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33770084 33770292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33781291 33781387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33783732 33783864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33788863 33788974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33789518 33789588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33790988 33791517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2544 nt):
ATGGCGCAGGCGATCTTTGAGGCCCTGGAGGGAATGGACAATCAGACCGTTCTGGCTGTCCAGTCATTAT
TGGATGGCCAAGGAGCAGTCCCTGATCCGACAGGCCAGAGTGTCAATGCGCCCCCTGCTATCCAGCCATT
GGATGACGAGGATGTATTTCTCTGCGGGAAGTGTAAGAAGCAATTCAACTCGCTGCCAGCGTTTATGACC
CACAAGCGGGAACAGTGCCAGGGGAATGCCCCCGCCCTGGCCACAGTCTCACTGGCCACCAACAGCATCT
ACCCACCTTCGGCAGCACCCACAGCGGTCCAGCAGGCCCCAACTCCTGCCAATCGCCAGATCTCCACATA
CATCACAGTGCCCCCGTCCCCACTGATCCAGACCCTGGTGCAGGGGAACATCTTGGTGAGCGATGATGTG
CTCATGTCTGCCATGTCAGCCTTCACATCCCTGGACCAGCCCATGCCCCAGGGCCCCCCACCTGTGCAGA
GCAGCCTGAACATGCATTCCGTGCCCAGCTACCTCACCCAGCCTCCACCTCCTCCTCCACCTCCTCCACC
ACTGCCCCCACCGCCACCACCTCAGCCTCCACCACCTCCACCCCAGAGCCTGGGCCCCCCTGGGCGTCCC
AACCCTGGTGGGAACGGTGTGGTGGAGGTGTACAGTGCTGCTGCGCCCCTGGCTGGGAGTGGAACGGTGG
AGATCCAGGCACTGGGGATGCAGCCCTACCCACCCCTAGAGGTGCCAAACCAGTGTGTGGAGCCTCCAGT
ATATCCCACCCCCACAGTGTACAGCCCTGGCAAACAGGGATTCAAACCCAAAGGACCAAACCCCGCCGCC
CCCATGACCAGCGCCACCGGGGGCACGGTGGCCACCTTTGACTCTCCAGCAACGCTGAAGACCCGACGAG
CTAAAGCTGCAGGGAAGCCAAAGGCTCAGAAACTCAAGTGCTCATACTGTGACAAGTCATTCACCAAAAA
CTTTGACCTGCAGCAGCACATCCGAAGCCACACCGGTGAGAAGCCCTTCCAGTGCATTGCATGTGGCCGT
GCCTTTGCCCAGAAGTCTAATGTTAAGAAACACATGCAGACCCACAAGGTGTGGCCTCCAGGACACAGTG
GTGGCACCGTGTCTCGAAACTCTGTGACCGTACAGGTCATGGCCCTGAACCCCAGCAGGCAGGAGGACGA
GGAAAGCACAGGGTTGGGCCAGCCCCTGCCGGGTGCGCCACAGCCCCAGGCCTTGTCCACAGCTGGTGAG
GAAGAGGGGGACAAGCCGGAGTCCAAGCAGGTGGTCCTCATCGACAGCTCCTACCTGTGCCAATTCTGCC
CCAGCAAATTCAGCACCTACTTCCAGCTCAAGTCTCACATGACCCAGCATAAGAATGAGCAGGTGTACAA
GTGTGTGGTCAAAAGCTGTGCCCAGACGTTCCCAAAGCTCGACACATTTCTGGAGCACATCAAGAGCCAC
CAGGAGGAGCTGAGCTACCGCTGCCACCTCTGCGGCAAGGACTTCCCCTCGCTGTACGACCTGGGCGTGC
ACCAGTACTCCCACAGCCTCCTGCCACAGCACAGCCCCAAGAAGGACAATGCCGTCTACAAGTGTGTCAA
ATGTGTCAACAAATACTCCACCCCTGAGGCCCTGGAGCACCACCTGCAGACCGCCACTCACAACTTCCCC
TGCCCACACTGCCAGAAGGTGTTTCCTTGTGAACGCTACCTGCGGCGTCATCTGCCCACCCACGGCAGCG
GGGGCAGGTTCAAGTGCCAAGTGTGCAAGAAGTTCTTCCGGCGGGAGCATTATCTCAAACTGCATGCTCA
CATCCACTCGGGTGAGAAGCCCTACAAATGCTCAGTGTGCGAGTCTGCGTTCAACCGCAAGGACAAACTG
AAGAGACACATGTTGATCCACGAGCCCTTCAAGAAATACAAATGCCCTTTCTCGACGCACACAGGCTGCA
GTAAGGAGTTCAACCGGCCGGACAAGCTGAAGGCCCACATCCTCTCCCACTCTGGCATGAAGCTCCACAA
ATGCGCCCTGTGCAGCAAGTCCTTCAGCCGCCGTGCCCACCTCGCCGAGCATCAGCGCGCCCACACGGGC
AACTACAAGTTCCGCTGTGCTGGCTGCGCCAAGGGCTTTTCCCGCCACAAATACCTCAAAGATCACCGCT
GTCGTCTCGGCCCCCAAAAGGACAAGGACCTGCAAACCCGGCGGCCCCCCCAGAGGAGGGCAGCCCCCCG
CAGTTGCGGCAGTGGTGGGCGCAAGGTGCTGACCCCCTTGCCTGACCCGCTGGGGCTGGAGGAGCTGAAG
GACACAGGGGCTGGGCTGGTGCCCGAGGCTGTCCCCGGCAAGCCGCCCTTCGCAGAGCCGGACGCGGTGC
TGTCCATCGTTGTGGGTGGTGCGGTGGGCGCGGAAACTGAGCTGGTGGTACCTGGACACGCTGAGGGGCT
GGGCTCCAACCTGGCTCTGGCGGAGCTGCAGGCTGGGGCCGAGGGCCCATGTGCCATGCTCGCTGTGCCC
GTCTACATCCAGGCCTCCGAGTGA

Translation (847 aa):
MAQAIFEALEGMDNQTVLAVQSLLDGQGAVPDPTGQSVNAPPAIQPLDDEDVFLCGKCKKQFNSLPAFMT
HKREQCQGNAPALATVSLATNSIYPPSAAPTAVQQAPTPANRQISTYITVPPSPLIQTLVQGNILVSDDV
LMSAMSAFTSLDQPMPQGPPPVQSSLNMHSVPSYLTQPPPPPPPPPPLPPPPPPQPPPPPPQSLGPPGRP
NPGGNGVVEVYSAAAPLAGSGTVEIQALGMQPYPPLEVPNQCVEPPVYPTPTVYSPGKQGFKPKGPNPAA
PMTSATGGTVATFDSPATLKTRRAKAAGKPKAQKLKCSYCDKSFTKNFDLQQHIRSHTGEKPFQCIACGR
AFAQKSNVKKHMQTHKVWPPGHSGGTVSRNSVTVQVMALNPSRQEDEESTGLGQPLPGAPQPQALSTAGE
EEGDKPESKQVVLIDSSYLCQFCPSKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIKSH
QEELSYRCHLCGKDFPSLYDLGVHQYSHSLLPQHSPKKDNAVYKCVKCVNKYSTPEALEHHLQTATHNFP
CPHCQKVFPCERYLRRHLPTHGSGGRFKCQVCKKFFRREHYLKLHAHIHSGEKPYKCSVCESAFNRKDKL
KRHMLIHEPFKKYKCPFSTHTGCSKEFNRPDKLKAHILSHSGMKLHKCALCSKSFSRRAHLAEHQRAHTG
NYKFRCAGCAKGFSRHKYLKDHRCRLGPQKDKDLQTRRPPQRRAAPRSCGSGGRKVLTPLPDPLGLEELK
DTGAGLVPEAVPGKPPFAEPDAVLSIVVGGAVGAETELVVPGHAEGLGSNLALAELQAGAEGPCAMLAVP
VYIQASE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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