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Report for CCDS13198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13198.1 Public Homo sapiens 20 POFUT1 24 110 108 CCDS HistoryNCBI Gene:23509Re-query CCDS DB by CCDS ID:13198.1Re-query CCDS DB by GeneID:23509See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13198.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375749.8 ENSP00000364902.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375749.8Link to Ensembl Protein Viewer:ENSP00000364902.3Re-query CCDS DB by Nucleotide ID:ENST00000375749Re-query CCDS DB by Protein ID:ENSP00000364902
Original member Current member NCBI NM_015352.2 NP_056167.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015352.2Link to Protein Sequence:NP_056167.1Re-query CCDS DB by Nucleotide ID:NM_015352Re-query CCDS DB by Protein ID:NP_056167Link to BLAST:NP_056167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056167.1 388 Q9H488-1 388 100% 0 0

Chromosomal Locations for CCDS 13198.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 32207942 32208065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32210071 32210192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32215269 32215451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32216609 32216721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32228263 32228455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32230819 32231061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32234473 32234661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGGCGCCGCCGCGTGGGCACGGCCGCTGAGCGTGTCTTTCCTGCTGCTGCTTCTGCCGCTCCCGGGGA
TGCCTGCGGGCTCCTGGGACCCGGCCGGTTACCTGCTCTACTGCCCCTGCATGGGGCGCTTTGGGAACCA
GGCCGATCACTTCTTGGGCTCTCTGGCATTTGCAAAGCTGCTAAACCGTACCTTGGCTGTCCCTCCTTGG
ATTGAGTACCAGCATCACAAGCCTCCTTTCACCAACCTCCATGTGTCCTACCAGAAGTACTTCAAGCTGG
AGCCCCTCCAGGCTTACCATCGGGTCATCAGCTTGGAGGATTTCATGGAGAAGCTGGCACCCACCCACTG
GCCCCCTGAGAAGCGGGTGGCATACTGCTTTGAGGTGGCAGCCCAGCGAAGCCCAGATAAGAAGACGTGC
CCCATGAAGGAAGGAAACCCCTTTGGCCCATTCTGGGATCAGTTTCATGTGAGTTTCAACAAGTCGGAGC
TTTTTACAGGCATTTCCTTCAGTGCTTCCTACAGAGAACAATGGAGCCAGAGATTTTCTCCAAAGGAACA
TCCGGTGCTTGCCCTGCCAGGAGCCCCAGCCCAGTTCCCCGTCCTAGAGGAACACAGGCCACTACAGAAG
TACATGGTATGGTCAGACGAAATGGTGAAGACGGGAGAGGCCCAGATTCATGCCCACCTTGTCCGGCCCT
ATGTGGGCATTCATCTGCGCATTGGCTCTGACTGGAAGAACGCCTGTGCCATGCTGAAGGACGGGACTGC
AGGCTCGCACTTCATGGCCTCTCCGCAGTGTGTGGGCTACAGCCGCAGCACAGCGGCCCCCCTCACGATG
ACTATGTGCCTGCCTGACCTGAAGGAGATCCAGAGGGCTGTGAAGCTCTGGGTGAGGTCGCTGGATGCCC
AGTCGGTCTACGTTGCTACTGATTCCGAGAGTTATGTGCCTGAGCTCCAACAGCTCTTCAAAGGGAAGGT
GAAGGTGGTGAGCCTGAAGCCTGAGGTGGCCCAGGTCGACCTGTACATCCTCGGCCAAGCCGACCACTTT
ATTGGCAACTGTGTCTCCTCCTTCACTGCCTTTGTGAAGCGGGAGCGGGACCTCCAGGGGAGGCCGTCTT
CTTTCTTCGGCATGGACAGGCCCCCTAAGCTGCGGGACGAGTTCTGA

Translation (388 aa):
MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPW
IEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPEKRVAYCFEVAAQRSPDKKTC
PMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQRFSPKEHPVLALPGAPAQFPVLEEHRPLQK
YMVWSDEMVKTGEAQIHAHLVRPYVGIHLRIGSDWKNACAMLKDGTAGSHFMASPQCVGYSRSTAAPLTM
TMCLPDLKEIQRAVKLWVRSLDAQSVYVATDSESYVPELQQLFKGKVKVVSLKPEVAQVDLYILGQADHF
IGNCVSSFTAFVKRERDLQGRPSSFFGMDRPPKLRDEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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