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Report for CCDS13093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13093.1 Public Homo sapiens 20 TRMT6 24 110 108 CCDS HistoryNCBI Gene:51605Re-query CCDS DB by CCDS ID:13093.1Re-query CCDS DB by GeneID:51605See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13093.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000203001.7 ENSP00000203001.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000203001.7Link to Ensembl Protein Viewer:ENSP00000203001.2Re-query CCDS DB by Nucleotide ID:ENST00000203001Re-query CCDS DB by Protein ID:ENSP00000203001
Original member Current member NCBI NM_015939.5 NP_057023.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015939.5Link to Protein Sequence:NP_057023.2Re-query CCDS DB by Nucleotide ID:NM_015939Re-query CCDS DB by Protein ID:NP_057023Link to BLAST:NP_057023.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057023.2 497 Q9UJA5-1 497 100% 0 0

Chromosomal Locations for CCDS 13093.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 5938535 5938726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5941053 5941139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5941243 5941345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5941951 5942036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5942428 5942786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5943559 5943683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5943948 5944031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5944162 5944253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5944805 5944914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5946406 5946533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5950278 5950405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGAGGGCTCAGGGGAGCAGCCGGGCCCACAACCACAGCATCCCGGAGACCACCGCATCCGCGACGGCG
ACTTCGTGGTGCTGAAACGTGAAGATGTGTTTAAAGCAGTACAAGTCCAGCGGAGAAAAAAAGTAACTTT
CGAAAAACAGTGGTTCTACCTGGATAACGTCATTGGCCATAGTTATGGAACTGCATTTGAAGTGACCAGT
GGAGGAAGTCTACAGCCCAAGAAGAAGAGGGAAGAGCCTACTGCAGAGACTAAAGAAGCGGGCACTGATA
ATCGAAATATAGTTGATGATGGGAAATCTCAGAAACTTACTCAAGATGACATAAAAGCTTTGAAGGACAA
GGGCATTAAAGGAGAGGAAATAGTTCAGCAGTTAATTGAAAATAGTACAACATTCCGAGACAAGACAGAA
TTTGCCCAAGATAAATATATTAAAAAGAAGAAAAAAAAATATGAAGCCATCATTACTGTTGTGAAGCCAT
CCACCCGTATTCTTTCAATTATGTATTATGCAAGAGAACCTGGAAAAATTAACCACATGAGATACGATAC
ACTAGCCCAGATGTTGACGTTGGGAAATATCCGTGCTGGCAACAAAATGATTGTGATGGAAACGTGTGCA
GGCTTGGTGCTGGGTGCAATGATGGAACGAATGGGAGGTTTTGGCTCCATTATTCAGCTATACCCTGGAG
GAGGACCTGTTCGGGCAGCAACAGCATGTTTTGGATTTCCCAAATCTTTTCTCAGTGGTCTTTATGAATT
CCCTCTCAACAAAGTGGACAGTCTTCTACATGGAACATTTTCTGCCAAGATGTTATCTTCAGAGCCAAAA
GACAGTGCTTTGGTTGAAGAAAGTAATGGCACACTGGAGGAAAAACAGGCTTCTGAACAAGAGAATGAAG
ACAGCATGGCAGAGGCCCCAGAGAGCAACCACCCAGAAGACCAGGAAACAATGGAAACAATTTCTCAAGA
TCCAGAACATAAGGGGCCTAAAGAGAGAGGAAGCAAAAAAGATTATATTCAGGAAAAACAGAGGAGACAA
GAAGAGCAGAGGAAAAGACATTTAGAGGCTGCCGCTCTGCTGAGTGAAAGAAACGCAGATGGTTTAATTG
TAGCTAGTCGTTTCCACCCCACTCCCCTGCTGCTGTCTTTGCTGGACTTTGTGGCCCCTTCAAGGCCGTT
TGTGGTCTACTGTCAGTACAAAGAGCCTCTGTTGGAATGCTACACAAAACTGCGGGAGAGGGGAGGGGTC
ATCAACCTCAGGCTGTCTGAAACCTGGCTCAGAAATTATCAGGTTTTGCCAGATCGAAGTCATCCTAAAC
TGCTGATGAGTGGAGGTGGGGGTTATCTTCTCTCCGGCTTCACCGTTGCCATGGACAACCTTAAAGCAGA
CACCAGCCTCAAATCTAATGCAAGCACTTTAGAATCACACGAGACTGAGGAGCCTGCAGCTAAAAAACGA
AAATGCCCAGAGTCTGACTCTTAA

Translation (497 aa):
MEGSGEQPGPQPQHPGDHRIRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGHSYGTAFEVTS
GGSLQPKKKREEPTAETKEAGTDNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTE
FAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCA
GLVLGAMMERMGGFGSIIQLYPGGGPVRAATACFGFPKSFLSGLYEFPLNKVDSLLHGTFSAKMLSSEPK
DSALVEESNGTLEEKQASEQENEDSMAEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQ
EEQRKRHLEAAALLSERNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGV
INLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVAMDNLKADTSLKSNASTLESHETEEPAAKKR
KCPESDS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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