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Report for CCDS1293.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1293.2 Public Homo sapiens 1 FMO2 24 110 108 CCDS HistoryNCBI Gene:2327Re-query CCDS DB by CCDS ID:1293.2Re-query CCDS DB by GeneID:2327See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 1293.1
The coding region has been updated to extend the C-terminus based on the functional allele represented in the GRCh38 reference genome assembly, supported by publications (e.g., PMIDs 9804831, 11042094) and orthologous data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1293.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000209929.10 ENSP00000209929.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000209929.10Link to Ensembl Protein Viewer:ENSP00000209929.8Re-query CCDS DB by Nucleotide ID:ENST00000209929Re-query CCDS DB by Protein ID:ENSP00000209929
Original member Current member NCBI NM_001460.5 NP_001451.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001460.5Link to Protein Sequence:NP_001451.2Re-query CCDS DB by Nucleotide ID:NM_001460Re-query CCDS DB by Protein ID:NP_001451Link to BLAST:NP_001451.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001451.2 535 Q99518 535 100% 0 0

Chromosomal Locations for CCDS 1293.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171185714 171185845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171193335 171193523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171196649 171196811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171199346 171199488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171203865 171204064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171205279 171205634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171207718 171207790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171208794 171209145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCAAAGAAGGTAGCTGTGATTGGAGCTGGGGTCAGTGGCCTAATTTCTCTGAAGTGCTGTGTGGATG
AGGGACTTGAGCCCACTTGCTTTGAGAGAACTGAAGATATTGGAGGAGTGTGGAGGTTCAAAGAGAATGT
GGAAGATGGCCGAGCAAGTATCTATCAATCTGTCGTTACCAACACCAGCAAAGAAATGTCCTGTTTCAGT
GACTTTCCAATGCCTGAAGATTTTCCAAACTTCCTGCATAATTCTAAACTTCTGGAATATTTCAGGATTT
TTGCTAAAAAATTTGATCTGCTAAAATATATTCAGTTCCAGACAACTGTCCTTAGTGTGAGAAAATGTCC
AGATTTCTCATCCTCTGGCCAATGGAAGGTTGTCACTCAGAGCAACGGCAAGGAGCAGAGTGCTGTCTTT
GACGCAGTTATGGTTTGCAGTGGCCACCACATTCTACCTCATATCCCACTGAAGTCATTTCCAGGTATGG
AGAGGTTCAAAGGCCAATATTTCCATAGCCGCCAATACAAGCATCCAGATGGATTTGAGGGAAAACGCAT
CCTGGTGATTGGAATGGGAAACTCAGGCTCAGATATTGCTGTTGAGCTGAGTAAGAATGCTGCTCAGGTT
TTTATCAGCACCAGGCATGGCACCTGGGTCATGAGCCGTATCTCTGAAGATGGCTATCCTTGGGACTCAG
TGTTCCACACCCGGTTTCGTTCTATGCTCCGCAATGTACTGCCACGAACAGCTGTAAAATGGATGATAGA
ACAACAGATGAATCGGTGGTTCAACCATGAAAATTATGGCCTTGAGCCTCAAAACAAATACATTATGAAG
GAACCTGTACTAAATGATGATGTCCCAAGTCGTCTACTCTGTGGAGCCATCAAGGTGAAATCTACAGTGA
AAGAGCTCACAGAAACTTCTGCCATCTTTGAGGATGGAACAGTGGAGGAGAACATTGATGTCATCATTTT
TGCAACAGGATATAGTTTCTCTTTTCCCTTCCTTGAAGATTCACTCGTTAAAGTAGAGAATAATATGGTC
TCACTGTATAAATACATATTCCCCGCTCACCTGGACAAGTCAACCCTCGCGTGCATTGGTCTCATCCAGC
CCCTAGGTTCCATTTTCCCAACTGCTGAACTTCAAGCTCGTTGGGTGACAAGAGTTTTCAAAGGCTTGTG
TAGCCTGCCCTCAGAGAGAACTATGATGATGGACATTATCAAAAGGAATGAAAAAAGAATTGACCTGTTT
GGAGAAAGCCAGAGCCAGACGTTGCAGACCAATTATGTTGACTACTTGGACGAGCTCGCCTTAGAGATAG
GTGCGAAGCCAGATTTCTGCTCTCTCTTGTTCAAAGATCCTAAACTGGCTGTGAGACTCTATTTCGGACC
CTGCAACTCCTATCAGTATCGCCTGGTTGGGCCTGGGCAATGGGAAGGAGCCAGAAATGCCATCTTCACC
CAGAAACAAAGAATACTGAAGCCACTCAAGACTCGGGCCCTGAAGGATTCATCTAATTTCTCAGTTTCTT
TTCTGTTGAAAATCCTGGGCCTTCTTGCTGTTGTTGTGGCCTTTTTTTGCCAACTTCAATGGTCCTAG

Translation (535 aa):
MAKKVAVIGAGVSGLISLKCCVDEGLEPTCFERTEDIGGVWRFKENVEDGRASIYQSVVTNTSKEMSCFS
DFPMPEDFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVLSVRKCPDFSSSGQWKVVTQSNGKEQSAVF
DAVMVCSGHHILPHIPLKSFPGMERFKGQYFHSRQYKHPDGFEGKRILVIGMGNSGSDIAVELSKNAAQV
FISTRHGTWVMSRISEDGYPWDSVFHTRFRSMLRNVLPRTAVKWMIEQQMNRWFNHENYGLEPQNKYIMK
EPVLNDDVPSRLLCGAIKVKSTVKELTETSAIFEDGTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMV
SLYKYIFPAHLDKSTLACIGLIQPLGSIFPTAELQARWVTRVFKGLCSLPSERTMMMDIIKRNEKRIDLF
GESQSQTLQTNYVDYLDELALEIGAKPDFCSLLFKDPKLAVRLYFGPCNSYQYRLVGPGQWEGARNAIFT
QKQRILKPLKTRALKDSSNFSVSFLLKILGLLAVVVAFFCQLQWS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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