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Report for CCDS12418.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12418.2 Public Homo sapiens 19 C19orf12 24 110 108 CCDS HistoryNCBI Gene:83636Re-query CCDS DB by CCDS ID:12418.2Re-query CCDS DB by GeneID:83636See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12418.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323670.14 ENSP00000313332.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323670.14Link to Ensembl Protein Viewer:ENSP00000313332.9Re-query CCDS DB by Nucleotide ID:ENST00000323670Re-query CCDS DB by Protein ID:ENSP00000313332
Original member Current member EBI ENST00000623113.3 ENSP00000485413.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000623113.3Link to Ensembl Protein Viewer:ENSP00000485413.2Re-query CCDS DB by Nucleotide ID:ENST00000623113Re-query CCDS DB by Protein ID:ENSP00000485413
Original member Current member NCBI NM_001031726.4 NP_001026896.3 Accepted alive Link to Nucleotide Sequence:NM_001031726.4Link to Protein Sequence:NP_001026896.3Re-query CCDS DB by Nucleotide ID:NM_001031726Re-query CCDS DB by Protein ID:NP_001026896Link to BLAST:NP_001026896.3
Original member Current member NCBI NM_001256047.2 NP_001242976.1 Accepted alive Link to Nucleotide Sequence:NM_001256047.2Link to Protein Sequence:NP_001242976.1Re-query CCDS DB by Nucleotide ID:NM_001256047Re-query CCDS DB by Protein ID:NP_001242976Link to BLAST:NP_001242976.1
Original member Current member NCBI NM_031448.6 NP_113636.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031448.6Link to Protein Sequence:NP_113636.2Re-query CCDS DB by Nucleotide ID:NM_031448Re-query CCDS DB by Protein ID:NP_113636Link to BLAST:NP_113636.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026896.3 141 Q9NSK7-4 141 100% 0 0
NP_001242976.1 141 Q9NSK7-4 141 100% 0 0
NP_113636.2 141 Q9NSK7-4 141 100% 0 0

Chromosomal Locations for CCDS 12418.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29702712 29702977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29708254 29708413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGACTATCATGGTGGAGGACATCATGAAGCTGCTGTGCTCCCTTTCTGGGGAGAGGAAGATGAAGGCGG
CTGTCAAGCACTCTGGGAAGGGTGCCCTGGTCACAGGGGCCATGGCCTTCGTCGGGGGTTTGGTGGGCGG
CCCACCGGGACTCGCCGTTGGGGGGGCTGTCGGGGGGCTGTTAGGTGCCTGGATGACAAGTGGACAGTTT
AAGCCGGTTCCTCAGATCCTAATGGAGCTGCCCCCTGCCGAGCAACAGAGGCTCTTTAACGAAGCCGCAG
CCATCATCAGGCACCTGGAGTGGACGGACGCCGTGCAGCTGACCGCGCTGGTCATGGGCAGCGAGGCCCT
GCAGCAGCAGCTGCTGGCCATGCTGGTGAACTACGTCACCAAGGAGCTGCGGGCCGAGATCCAGTATGAT
GACTAG

Translation (141 aa):
MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGLLGAWMTSGQF
KPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTKELRAEIQYD
D


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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