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Report for CCDS12379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12379.1 Public Homo sapiens 19 ISYNA1 24 110 108 CCDS HistoryNCBI Gene:51477Re-query CCDS DB by CCDS ID:12379.1Re-query CCDS DB by GeneID:51477See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338128.13 ENSP00000337746.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338128.13Link to Ensembl Protein Viewer:ENSP00000337746.7Re-query CCDS DB by Nucleotide ID:ENST00000338128Re-query CCDS DB by Protein ID:ENSP00000337746
Original member Current member NCBI NM_016368.5 NP_057452.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016368.5Link to Protein Sequence:NP_057452.1Re-query CCDS DB by Nucleotide ID:NM_016368Re-query CCDS DB by Protein ID:NP_057452Link to BLAST:NP_057452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057452.1 558 Q9NPH2-1 558 100% 0 0

Chromosomal Locations for CCDS 12379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18434913 18435117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18435266 18435483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18435563 18435676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18435757 18435921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436032 18436247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436330 18436479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436684 18436877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436973 18437105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18437599 18437760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18437860 18437979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGAGGCCGCCGCCCAGTTCTTCGTCGAGAGCCCGGACGTGGTCTACGGCCCCGAGGCCATCGAGGCGC
AATACGAGTACCGGACGACGCGCGTCAGCCGCGAGGGTGGCGTTCTCAAGGTGCACCCCACGTCCACGCG
CTTCACCTTCCGGACCGCCCGGCAGGTGCCCCGGCTCGGGGTCATGCTTGTCGGCTGGGGCGGGAACAAC
GGCTCCACACTCACCGCCGCGGTGCTGGCCAATCGACTGCGTTTGTCCTGGCCCACGCGCAGCGGCCGCA
AGGAGGCCAACTACTACGGCTCGCTGACTCAGGCGGGCACCGTGAGCCTGGGCCTGGACGCCGAGGGCCA
GGAGGTGTTCGTACCCTTCAGCGCGGTGCTGCCCATGGTGGCGCCCAACGACCTCGTGTTCGATGGCTGG
GACATCTCGTCGCTGAACCTGGCCGAGGCGATGCGGCGCGCGAAGGTGCTGGACTGGGGGCTGCAGGAGC
AACTGTGGCCGCACATGGAGGCCCTGCGGCCCCGGCCTTCTGTTTACATCCCCGAATTCATCGCGGCCAA
CCAGAGCGCGCGCGCGGACAACCTCATCCCAGGCTCGCGTGCGCAGCAGCTGGAGCAGATCCGCAGGGAC
ATCCGAGACTTCCGGTCTAGCGCGGGGCTGGACAAAGTCATAGTGCTGTGGACGGCGAACACGGAGCGCT
TCTGTGAGGTGATTCCAGGCCTCAACGACACAGCCGAGAACCTGCTGCGCACCATTGAGCTCGGTCTGGA
GGTGTCGCCCTCCACGCTCTTCGCCGTGGCCAGCATCCTGGAGGGCTGTGCCTTCCTCAATGGGTCTCCG
CAGAACACCCTGGTGCCCGGAGCTCTTGAGCTCGCGTGGCAGCACCGGGTTTTTGTGGGCGGAGATGACT
TCAAGTCAGGCCAGACCAAAGTCAAGTCCGTGCTTGTGGACTTCCTCATTGGCTCCGGCCTCAAGACCAT
GTCCATCGTGAGTTACAACCACCTGGGCAACAACGATGGGGAGAACCTATCGGCGCCATTGCAGTTCCGC
TCTAAGGAGGTGTCCAAGAGCAACGTGGTGGACGACATGGTGCAGAGCAACCCAGTGCTCTATACGCCCG
GCGAAGAGCCTGACCACTGCGTGGTCATCAAGTATGTGCCGTACGTGGGTGACAGCAAGCGCGCGCTGGA
TGAGTATACCTCGGAGCTGATGCTGGGCGGAACCAACACACTGGTGCTGCACAACACGTGTGAGGACTCG
CTGCTGGCCGCACCCATCATGCTGGACCTAGCGCTGCTGACCGAGCTGTGCCAGCGCGTGAGCTTCTGCA
CTGACATGGACCCCGAGCCGCAGACCTTCCACCCCGTGCTGTCCCTGCTCAGCTTCCTCTTCAAGGCGCC
ACTAGTGCCGCCCGGCAGCCCGGTGGTCAATGCGCTTTTCCGCCAGCGCAGCTGCATCGAGAACATCCTC
AGGGCCTGCGTGGGGCTCCCGCCACAGAACCACATGCTCCTGGAACACAAAATGGAGCGCCCAGGGCCCA
GCCTCAAGCGAGTTGGACCCGTGGCTGCCACCTACCCTATGTTGAACAAGAAAGGACCGGTACCCGCTGC
CACCAATGGCTGCACCGGTGATGCCAATGGGCATCTGCAAGAGGAGCCCCCAATGCCCACCACCTGA

Translation (558 aa):
MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLKVHPTSTRFTFRTARQVPRLGVMLVGWGGNN
GSTLTAAVLANRLRLSWPTRSGRKEANYYGSLTQAGTVSLGLDAEGQEVFVPFSAVLPMVAPNDLVFDGW
DISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYIPEFIAANQSARADNLIPGSRAQQLEQIRRD
IRDFRSSAGLDKVIVLWTANTERFCEVIPGLNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNGSP
QNTLVPGALELAWQHRVFVGGDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFR
SKEVSKSNVVDDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS
LLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALFRQRSCIENIL
RACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNGCTGDANGHLQEEPPMPTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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