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Report for CCDS12256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12256.1 Public Homo sapiens 19 TSPAN16 24 110 108 CCDS HistoryNCBI Gene:26526Re-query CCDS DB by CCDS ID:12256.1Re-query CCDS DB by GeneID:26526See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12256.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316737.5 ENSP00000319486.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000316737.5Link to Ensembl Protein Viewer:ENSP00000319486.1Re-query CCDS DB by Nucleotide ID:ENST00000316737Re-query CCDS DB by Protein ID:ENSP00000319486
Original member Current member NCBI NM_012466.4 NP_036598.1 Accepted alive Link to Nucleotide Sequence:NM_012466.4Link to Protein Sequence:NP_036598.1Re-query CCDS DB by Nucleotide ID:NM_012466Re-query CCDS DB by Protein ID:NP_036598Link to BLAST:NP_036598.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036598.1 245 Q9UKR8-1 245 100% 0 0

Chromosomal Locations for CCDS 12256.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11296298 11296366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11298142 11298339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11298872 11298946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11301201 11301308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11306604 11306756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11312139 11312222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11326794 11326844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCTGAAATCCACACTCCGTATTCTTCCTTGAAGAAACTGTTATCTTTACTCAATGGCTTCGTGGCTG
TGTCTGGCATCATCCTAGTTGGCCTGGGCATTGGTGGTAAATGTGGAGGGGCCTCTCTGACGAATGTCCT
CGGGCTGTCCTCCGCATACCTCCTTCACGTTGGCAACCTGTGCCTGGTGATGGGATGCATCACGGTACTG
CTTGGCTGTGCCGGGTGGTATGGAGCGACTAAAGAGAGCAGAGGCACGCTCTTGTTTTGCATCCTGTCAA
TGGTTATTGTCCTCATCATGGAAGTTACAGCTGCCACAGTGGTCCTTCTTTTCTTTCCAATTGTTGGAGA
TGTGGCCTTGGAACACACCTTCGTGACCCTGAGGAAGAATTACAGAGGTTACAACGAGCCAGACGACTAT
TCTACACAGTGGAACTTGGTCATGGAGAAGCTAAAGTGCTGTGGGGTGAATAACTACACAGATTTTTCTG
GCTCTTCCTTCGAAATGACAACGGGCCACACCTACCCCAGGAGTTGCTGTAAATCCATCGGAAGTGTGTC
CTGTGACGGACGCGATGTGTCTCCAAACGTCATCCACCAGAAGGGCTGTTTCCATAAACTCCTAAAAATC
ACCAAGACTCAGAGCTTCACCCTGAGTGGGAGCTCTCTGGGAGCTGCAGTGATACAGAGGTGGGGGTCTC
GCTATGTTGCGCAGGCTGGTCTTGAACTGCTGGCCTAA

Translation (245 aa):
MAEIHTPYSSLKKLLSLLNGFVAVSGIILVGLGIGGKCGGASLTNVLGLSSAYLLHVGNLCLVMGCITVL
LGCAGWYGATKESRGTLLFCILSMVIVLIMEVTAATVVLLFFPIVGDVALEHTFVTLRKNYRGYNEPDDY
STQWNLVMEKLKCCGVNNYTDFSGSSFEMTTGHTYPRSCCKSIGSVSCDGRDVSPNVIHQKGCFHKLLKI
TKTQSFTLSGSSLGAAVIQRWGSRYVAQAGLELLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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