NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1212.1 Public Homo sapiens 1 ITLN2 24 110 108 CCDS HistoryNCBI Gene:142683Re-query CCDS DB by CCDS ID:1212.1Re-query CCDS DB by GeneID:142683See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1212.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368029.4 ENSP00000357008.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368029.4Link to Ensembl Protein Viewer:ENSP00000357008.3Re-query CCDS DB by Nucleotide ID:ENST00000368029Re-query CCDS DB by Protein ID:ENSP00000357008
Original member Current member NCBI NM_080878.3 NP_543154.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080878.3Link to Protein Sequence:NP_543154.1Re-query CCDS DB by Nucleotide ID:NM_080878Re-query CCDS DB by Protein ID:NP_543154Link to BLAST:NP_543154.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543154.1 325 Q8WWU7-1 325 100% 0 0

Chromosomal Locations for CCDS 1212.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 160945140 160945292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160947929 160948032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160950046 160950166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160950553 160950711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160951043 160951290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160952620 160952733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160954387 160954450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160954727 160954741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGCTGTCCATGCTGAGGACAATGACCAGACTCTGCTTCCTGTTATTCTTCTCTGTGGCCACCAGTGGGT
GCAGTGCAGCAGCAGCCTCTTCTCTTGAGATGCTCTCGAGGGAATTCGAAACCTGTGCCTTCTCCTTTTC
TTCCCTGCCTAGAAGCTGCAAAGAAATCAAGGAACGCTGCCATAGTGCAGGTGATGGCCTGTATTTTCTC
CGCACCAAGAATGGTGTTGTCTACCAGACCTTCTGTGACATGACTTCTGGGGGTGGCGGCTGGACCCTGG
TGGCCAGCGTGCACGAGAATGACATGCGTGGGAAGTGCACGGTGGGTGATCGCTGGTCCAGTCAGCAGGG
CAACAAAGCAGACTACCCAGAGGGGGATGGCAACTGGGCCAACTACAACACCTTTGGATCTGCAGAGGCG
GCCACGAGCGATGACTACAAGAACCCTGGCTACTACGACATCCAGGCCAAGGACCTGGGCATCTGGCATG
TGCCCAACAAGTCCCCCATGCAGCATTGGAGAAACAGCGCCCTGCTGAGGTACCGCACCAACACTGGCTT
CCTCCAGAGACTGGGACATAATCTGTTTGGCATCTACCAGAAATACCCAGTGAAATACAGATCAGGGAAA
TGTTGGAATGACAATGGCCCAGCCATACCTGTGGTCTATGACTTTGGTGATGCTAAGAAGACTGCATCTT
ATTACTCACCGTATGGTCAACGGGAATTTGTTGCAGGATTCGTTCAGTTCCGGGTGTTTAATAACGAGAG
AGCAGCCAACGCCCTTTGTGCTGGGATAAAAGTTACTGGCTGTAACACTGAGCATCACTGCATCGGTGGA
GGAGGGTTCTTCCCACAGGGCAAACCCCGTCAGTGTGGGGACTTCTCCGCCTTTGACTGGGATGGATATG
GAACTCACGTTAAGAGCAGCTGCAGTCGGGAGATAACGGAGGCGGCTGTACTCTTGTTCTATAGATGA

Translation (325 aa):
MLSMLRTMTRLCFLLFFSVATSGCSAAAASSLEMLSREFETCAFSFSSLPRSCKEIKERCHSAGDGLYFL
RTKNGVVYQTFCDMTSGGGGWTLVASVHENDMRGKCTVGDRWSSQQGNKADYPEGDGNWANYNTFGSAEA
ATSDDYKNPGYYDIQAKDLGIWHVPNKSPMQHWRNSALLRYRTNTGFLQRLGHNLFGIYQKYPVKYRSGK
CWNDNGPAIPVVYDFGDAKKTASYYSPYGQREFVAGFVQFRVFNNERAANALCAGIKVTGCNTEHHCIGG
GGFFPQGKPRQCGDFSAFDWDGYGTHVKSSCSREITEAAVLLFYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH