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Report for CCDS12078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12078.1 Public Homo sapiens 19 BTBD2 24 110 108 CCDS HistoryNCBI Gene:55643Re-query CCDS DB by CCDS ID:12078.1Re-query CCDS DB by GeneID:55643See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255608.9 ENSP00000255608.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255608.9Link to Ensembl Protein Viewer:ENSP00000255608.3Re-query CCDS DB by Nucleotide ID:ENST00000255608Re-query CCDS DB by Protein ID:ENSP00000255608
Original member Current member NCBI NM_017797.4 NP_060267.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017797.4Link to Protein Sequence:NP_060267.2Re-query CCDS DB by Nucleotide ID:NM_017797Re-query CCDS DB by Protein ID:NP_060267Link to BLAST:NP_060267.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060267.2 525 Q9BX70-1 525 100% 0 0

Chromosomal Locations for CCDS 12078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1986488 1986649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1986830 1986976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1987166 1987253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1987500 1987692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1990004 1990201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1990717 1990822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1993020 1993176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1997344 1997463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2015297 2015703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGCGGCGGGTGGGAGCGGCGGGCGTGCGTCGTGCCCGCCGGGGGTCGGGGTCGGCCCGGGCACGGGGG
GCAGTCCCGGGCCCAGCGCCAACGCCGCCGCCACCCCGGCCCCCGGCAACGCGGCCGCCGCCGCCGCCGC
CGCCGCCGCCGCCGCCGCCGCCCCTGGGCCGACGCCGCCCGCCCCGCCGGGCCCCGGGACAGACGCGCAG
GCCGCGGGCGCGGAGCGGGCGGAGGAGGCGGCGGGCCCGGGGGCGGCGGCGCTGCAGCGCGAGGCCGCGT
ACAACTGGCAGGCCAGCAAGCCCACCGTGCAGGAGCGCTTCGCCTTCCTCTTCAACAACGAGGTGCTGTG
CGACGTGCACTTCCTGGTGGGCAAGGGGCTCAGCTCGCAGCGCATCCCCGCGCACAGGTTCGTGCTGGCC
GTGGGCAGCGCCGTCTTTGATGCCATGTTCAACGGGGGAATGGCCACAACATCCACGGAGATTGAGCTGC
CCGACGTGGAACCCGCTGCCTTCCTCGCACTGCTCAAGTTTCTCTACTCGGACGAGGTGCAGATTGGCCC
GGAGACGGTGATGACCACGCTATACACCGCCAAGAAGTACGCGGTGCCAGCGCTCGAGGCCCATTGCGTG
GAGTTCCTGAAGAAGAACCTGCGAGCCGACAACGCCTTCATGCTGCTCACGCAGGCGCGACTCTTCGATG
AACCGCAGCTGGCCAGCCTGTGCCTGGAGAACATCGACAAAAACACTGCAGACGCCATCACCGCGGAGGG
CTTCACCGACATTGACCTGGACACGCTGGTGGCTGTCCTGGAGCGCGACACACTGGGCATCCGTGAGGTG
CGGCTGTTCAATGCCGTTGTCCGCTGGTCCGAGGCCGAGTGTCAGCGGCAGCAGCTGCAGGTGACGCCAG
AGAACAGGCGGAAGGTTCTGGGCAAGGCCCTGGGCCTCATTCGCTTCCCGCTCATGACCATCGAGGAGTT
CGCTGCAGGTCCCGCACAGTCGGGCATCCTGGTGGACCGCGAGGTGGTCAGCCTCTTCCTGCACTTCACC
GTCAACCCCAAGCCACGAGTGGAGTTCATTGACCGGCCCCGCTGCTGCCTGCGTGGGAAGGAGTGCAGCA
TCAACCGCTTCCAGCAGGTGGAGAGTCGCTGGGGCTACAGCGGGACCAGTGACCGCATCAGGTTCTCAGT
CAACAAGCGCATCTTCGTGGTGGGATTTGGGCTGTATGGATCCATCCACGGGCCCACCGACTACCAAGTG
AACATCCAGATTATTCACACCGATAGCAACACCGTCTTGGGCCAGAACGACACGGGCTTCAGCTGCGACG
GCTCAGCCAGCACCTTCCGCGTCATGTTCAAGGAGCCGGTGGAGGTGCTGCCCAACGTCAACTACACGGC
CTGTGCCACGCTCAAGGGCCCAGACTCCCACTACGGCACCAAAGGCCTGCGCAAGGTGACACACGAGTCG
CCCACCACGGGCGCCAAGACCTGCTTCACCTTTTGCTACGCGGCCGGGAACAACAATGGCACATCCGTGG
AGGACGGCCAGATCCCCGAGGTCATCTTCTACACCTAG

Translation (525 aa):
MAAGGSGGRASCPPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQ
AAGAERAEEAAGPGAAALQREAAYNWQASKPTVQERFAFLFNNEVLCDVHFLVGKGLSSQRIPAHRFVLA
VGSAVFDAMFNGGMATTSTEIELPDVEPAAFLALLKFLYSDEVQIGPETVMTTLYTAKKYAVPALEAHCV
EFLKKNLRADNAFMLLTQARLFDEPQLASLCLENIDKNTADAITAEGFTDIDLDTLVAVLERDTLGIREV
RLFNAVVRWSEAECQRQQLQVTPENRRKVLGKALGLIRFPLMTIEEFAAGPAQSGILVDREVVSLFLHFT
VNPKPRVEFIDRPRCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHGPTDYQV
NIQIIHTDSNTVLGQNDTGFSCDGSASTFRVMFKEPVEVLPNVNYTACATLKGPDSHYGTKGLRKVTHES
PTTGAKTCFTFCYAAGNNNGTSVEDGQIPEVIFYT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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