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Report for CCDS11945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11945.1 Public Homo sapiens 18 CXXC1 24 110 108 CCDS HistoryNCBI Gene:30827Re-query CCDS DB by CCDS ID:11945.1Re-query CCDS DB by GeneID:30827See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11945.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285106.11 ENSP00000285106.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285106.11Link to Ensembl Protein Viewer:ENSP00000285106.6Re-query CCDS DB by Nucleotide ID:ENST00000285106Re-query CCDS DB by Protein ID:ENSP00000285106
Original member Current member NCBI NM_014593.4 NP_055408.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014593.4Link to Protein Sequence:NP_055408.2Re-query CCDS DB by Nucleotide ID:NM_014593Re-query CCDS DB by Protein ID:NP_055408Link to BLAST:NP_055408.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055408.2 656 Q9P0U4-1 656 100% 0 0

Chromosomal Locations for CCDS 11945.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 50282593 50282739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50282854 50283006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50283265 50283361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50283515 50283564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50283705 50283815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50283894 50284101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50284378 50284562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50284732 50284839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50285002 50285247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50285325 50285351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50285749 50285928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50286022 50286257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50286539 50286639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50286740 50286858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50287587 50287589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGGAGGGAGATGGTTCAGACCCAGAGCCTCCAGATGCCGGGGAGGACAGCAAGTCCGAGAATGGGGAGA
ATGCGCCCATCTACTGCATCTGCCGCAAACCGGACATCAACTGCTTCATGATCGGGTGTGACAACTGCAA
TGAGTGGTTCCATGGGGACTGCATCCGGATCACTGAGAAGATGGCCAAGGCCATCCGGGAGTGGTACTGT
CGGGAGTGCAGAGAGAAAGACCCCAAGCTAGAGATTCGCTATCGGCACAAGAAGTCACGGGAGCGGGATG
GCAATGAGCGGGACAGCAGTGAGCCCCGGGATGAGGGTGGAGGGCGCAAGAGGCCTGTCCCTGATCCAGA
CCTGCAGCGCCGGGCAGGGTCAGGGACAGGGGTTGGGGCCATGCTTGCTCGGGGCTCTGCTTCGCCCCAC
AAATCCTCTCCGCAGCCCTTGGTGGCCACACCCAGCCAGCATCACCAGCAGCAGCAGCAGCAGATCAAAC
GGTCAGCCCGCATGTGTGGTGAGTGTGAGGCATGTCGGCGCACTGAGGACTGTGGTCACTGTGATTTCTG
TCGGGACATGAAGAAGTTCGGGGGCCCCAACAAGATCCGGCAGAAGTGCCGGCTGCGCCAGTGCCAGCTG
CGGGCCCGGGAATCGTACAAGTACTTCCCTTCCTCGCTCTCACCAGTGACGCCCTCAGAGTCCCTGCCAA
GGCCCCGCCGGCCACTGCCCACCCAACAGCAGCCACAGCCATCACAGAAGTTAGGGCGCATCCGTGAAGA
TGAGGGGGCAGTGGCGTCATCAACAGTCAAGGAGCCTCCTGAGGCTACAGCCACACCTGAGCCACTCTCA
GATGAGGACCTACCTCTGGATCCTGACCTGTATCAGGACTTCTGTGCAGGGGCCTTTGATGACCATGGCC
TGCCCTGGATGAGCGACACAGAAGAGTCCCCATTCCTGGACCCCGCGCTGCGGAAGAGGGCAGTGAAAGT
GAAGCATGTGAAGCGTCGGGAGAAGAAGTCTGAGAAGAAGAAGGAGGAGCGATACAAGCGGCATCGGCAG
AAGCAGAAGCACAAGGATAAATGGAAACACCCAGAGAGGGCTGATGCCAAGGACCCTGCGTCACTGCCCC
AGTGCCTGGGGCCCGGCTGTGTGCGCCCCGCCCAGCCCAGCTCCAAGTATTGCTCAGATGACTGTGGCAT
GAAGCTGGCAGCCAACCGCATCTACGAGATCCTCCCCCAGCGCATCCAGCAGTGGCAGCAGAGCCCTTGC
ATTGCTGAAGAGCACGGCAAGAAGCTGCTCGAACGCATTCGCCGAGAGCAGCAGAGTGCCCGCACTCGCC
TTCAGGAAATGGAACGCCGATTCCATGAGCTTGAGGCCATCATTCTACGTGCCAAGCAGCAGGCTGTGCG
CGAGGATGAGGAGAGCAACGAGGGTGACAGTGATGACACAGACCTGCAGATCTTCTGTGTTTCCTGTGGG
CACCCCATCAACCCACGTGTTGCCTTGCGCCACATGGAGCGCTGCTACGCCAAGTATGAGAGCCAGACGT
CCTTTGGGTCCATGTACCCCACACGCATTGAAGGGGCCACACGACTCTTCTGTGATGTGTATAATCCTCA
GAGCAAAACATACTGTAAGCGGCTCCAGGTGCTGTGCCCCGAGCACTCACGGGACCCCAAAGTGCCAGCT
GACGAGGTATGCGGGTGCCCCCTTGTACGTGATGTCTTTGAGCTCACGGGTGACTTCTGCCGCCTGCCCA
AGCGCCAGTGCAATCGCCATTACTGCTGGGAGAAGCTGCGGCGTGCGGAAGTGGACTTGGAGCGCGTGCG
TGTGTGGTACAAGCTGGACGAGCTGTTTGAGCAGGAGCGCAATGTGCGCACAGCCATGACAAACCGCGCG
GGATTGCTGGCCCTGATGCTGCACCAGACGATCCAGCACGATCCCCTCACTACCGACCTGCGCTCCAGTG
CCGACCGCTGA

Translation (656 aa):
MEGDGSDPEPPDAGEDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYC
RECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDLQRRAGSGTGVGAMLARGSASPH
KSSPQPLVATPSQHHQQQQQQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQL
RARESYKYFPSSLSPVTPSESLPRPRRPLPTQQQPQPSQKLGRIREDEGAVASSTVKEPPEATATPEPLS
DEDLPLDPDLYQDFCAGAFDDHGLPWMSDTEESPFLDPALRKRAVKVKHVKRREKKSEKKKEERYKRHRQ
KQKHKDKWKHPERADAKDPASLPQCLGPGCVRPAQPSSKYCSDDCGMKLAANRIYEILPQRIQQWQQSPC
IAEEHGKKLLERIRREQQSARTRLQEMERRFHELEAIILRAKQQAVREDEESNEGDSDDTDLQIFCVSCG
HPINPRVALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDPKVPA
DEVCGCPLVRDVFELTGDFCRLPKRQCNRHYCWEKLRRAEVDLERVRVWYKLDELFEQERNVRTAMTNRA
GLLALMLHQTIQHDPLTTDLRSSADR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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