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Report for CCDS11923.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11923.2 Public Homo sapiens 18 SETBP1 24 110 108 CCDS HistoryNCBI Gene:26040Re-query CCDS DB by CCDS ID:11923.2Re-query CCDS DB by GeneID:26040See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 11923.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11923.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000649279.2 ENSP00000497406.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649279.2Link to Ensembl Protein Viewer:ENSP00000497406.1Re-query CCDS DB by Nucleotide ID:ENST00000649279Re-query CCDS DB by Protein ID:ENSP00000497406
Original member Current member EBI ENST00000678152.1 ENSP00000502995.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678152.1Link to Ensembl Protein Viewer:ENSP00000502995.1Re-query CCDS DB by Nucleotide ID:ENST00000678152Re-query CCDS DB by Protein ID:ENSP00000502995
Original member Current member EBI ENST00000677130.1 ENSP00000503094.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677130.1Link to Ensembl Protein Viewer:ENSP00000503094.1Re-query CCDS DB by Nucleotide ID:ENST00000677130Re-query CCDS DB by Protein ID:ENSP00000503094
Original member Current member EBI ENST00000677077.1 ENSP00000503656.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677077.1Link to Ensembl Protein Viewer:ENSP00000503656.1Re-query CCDS DB by Nucleotide ID:ENST00000677077Re-query CCDS DB by Protein ID:ENSP00000503656
Original member Current member EBI ENST00000677068.1 ENSP00000504398.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677068.1Link to Ensembl Protein Viewer:ENSP00000504398.1Re-query CCDS DB by Nucleotide ID:ENST00000677068Re-query CCDS DB by Protein ID:ENSP00000504398
Original member Current member NCBI NM_001379141.1 NP_001366070.1 Accepted alive Link to Nucleotide Sequence:NM_001379141.1Link to Protein Sequence:NP_001366070.1Re-query CCDS DB by Nucleotide ID:NM_001379141Re-query CCDS DB by Protein ID:NP_001366070Link to BLAST:NP_001366070.1
Original member Current member NCBI NM_001379142.1 NP_001366071.1 Accepted alive Link to Nucleotide Sequence:NM_001379142.1Link to Protein Sequence:NP_001366071.1Re-query CCDS DB by Nucleotide ID:NM_001379142Re-query CCDS DB by Protein ID:NP_001366071Link to BLAST:NP_001366071.1
Original member Current member NCBI NM_015559.3 NP_056374.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015559.3Link to Protein Sequence:NP_056374.2Re-query CCDS DB by Nucleotide ID:NM_015559Re-query CCDS DB by Protein ID:NP_056374Link to BLAST:NP_056374.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001366070.1 1596 Q9Y6X0-1 1596 100% 0 0
NP_001366071.1 1596 Q9Y6X0-1 1596 100% 0 0
NP_056374.2 1596 Q9Y6X0-1 1596 100% 0 0

Chromosomal Locations for CCDS 11923.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44701347 44701832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44869230 44869283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44949881 44953340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45038485 45038655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45063079 45063698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4791 nt):
ATGGAGTCCAGGGAAACCTTAAGCAGCTCCCGGCAAAGAGGGGGCGAGTCAGACTTCCTGCCGGTCTCCT
CAGCCAAGCCCCCAGCTGCTCCTGGCTGTGCAGGAGAACCTTTGCTCTCCACTCCAGGACCTGGGAAGGG
GATCCCGGTGGGCGGAGAGCGCATGGAGCCAGAGGAGGAGGATGAACTAGGCTCAGGGCGGGATGTGGAT
TCCAACTCCAACGCGGACAGTGAGAAATGGGTGGCAGGAGATGGTTTGGAAGAGCAGGAATTTTCTATCA
AGGAGGCAAACTTCACAGAGGGAAGTCTGAAGCTAAAGATTCAGACCACAAAGCGGGCTAAGAAACCCCC
AAAGAATTTGGAGAACTATATATGTCCACCTGAGATCAAGATCACCATCAAGCAGTCTGGGGACCAGAAG
GTGTCCCGTGCTGGAAAAAATAGCAAAGCCACGAAGGAGGAAGAAAGAAGCCACTCCAAAAAGAAGCTCC
TCACAGCCAGTGACCTTGCAGCCAGTGACCTCAAAGGATTTCAGCCACAGGCTTACGAGAGGCCCCAGAA
ACATTCAACTCTCCATTATGACACGGGCCTCCCACAGGACTTCACCGGTGACACCTTAAAACCAAAGCAC
CAGCAAAAAAGCAGCAGCCAGAACCACATGGACTGGTCCACCAACTCTGACAGCGGACCCGTCACTCAGA
ATTGCTTCATCAGTCCAGAGTCTGGCAGAGAAACTGCAAGCACCAGCAAGATCCCCGCTCTTGAGCCCGT
GGCTTCCTTTGCAAAGGCCCAGGGTAAGAAAGGCAGTGCAGGGAACACGTGGAGTCAGTTGTCTAACAAT
AACAAAGATCTGCTCTTGGGAGGTGTGGCTCCATCCCCAAGCAGCCACAGCTCACCAGCCCCACCCAGCA
GCTCTGCTGAGTGCAACGGGCTTCAGCCCTTGGTGGATCAAGATGGAGGAGGTACAAAGGAGCCCCCAGA
ACCACCTACGGTGGGCAGCAAGAAAAAGTCCAGTAAAAAAGATGTGATAAGTCAGACCATACCAAACCCA
GACCTGGATTGGGTCAAGAATGCCCAGAAAGCATTTGACAATACAGAAGGGAAAAGGGAAGGTTATTCCG
CAGATAGTGCCCAAGAGGCATCACCAGCCAGGCAGAACGTGAGTTCTGCCAGTAATCCTGAAAATGACTC
AAGTCATGTCCGGATTACTATCCCCATCAAGGCACCCTCTCTGGATCCAACCAACCATAAGAGGAAAAAA
AGACAGTCCATTAAAGCGGTGGTGGAAAAGATCATGCCAGAGAAAGCCTTGGCTTCTGGAATCACCATGA
GCAGTGAAGTAGTTAACAGGATACTTTCCAACTCTGAGGGGAATAAGAAGGATCCCCGTGTCCCTAAGTT
GAGTAAAATGATAGAGAATGAGTCCCCCTCAGTTGGCCTTGAAACTGGTGGAAATGCTGAGAAAGTTATC
CCAGGAGGTGTGTCTAAGCCGCGGAAGCCACCCATGGTCATGACACCTCCAACGTGCACAGATCACTCTC
CATCCAGAAAGCTGCCAGAAATCCAGCATCCAAAATTTGCTGCAAAACGAAGGTGGACTTGCAGCAAACC
AAAACCTAGCACCATGCTTCGAGAGGCAGTTATGGCCACCTCTGATAAACTGATGCTGGAGCCCCCGTCT
GCATATCCCATCACCCCATCCAGCCCTCTCTACACCAACACAGACAGTCTTACTGTGATCACTCCAGTCA
AAAAGAAGCGGGGACGACCAAAGAAGCAGCCTTTGCTCACAGTCGAGACGATTCATGAGGGAACTTCCAC
CAGCCCCGTCAGTCCCATCAGCCGAGAGTTTCCTGGCACTAAGAAAAGAAAGCGACGACGCAATTTAGCG
AAGTTGGCCCAGCTAGTGCCGGGAGAGGACAAACCCATGAGCGAGATGAAATTTCACAAGAAAGTTGGAA
AGCTCGGCGTGTTGGATAAGAAGACCATCAAAACTATCAATAAGATGAAGACACTCAAGAGGAAAAACAT
CTTGAATCAGATCTTGTCCTGTTCCAGCAGCGTTGCTCTGAAGGCAAAAGCTCCCCCAGAGACCAGCCCT
GGGGCAGCAGCCATTGAAAGCAAACTGGGCAAGCAGATTAATGTCAGCAAGAGGGGAACCATCTACATTG
GCAAGAAGCGGGGCAGGAAGCCAAGAGCAGAGCTGCCACCCCCATCCGAAGAACCCAAAACAGCCATCAA
GCACCCCAGGCCTGTTTCTAGCCAGCCGGATGTTCCAGCCGTGCCTTCCAACTTTCAGTCACTTGTGGCG
TCTTCACCAGCAGCTATGCACCCACTTTCAACACAGTTAGGTGGGTCCAATGGCAACCTGAGCCCTGCCA
GCACTGAAACCAATTTTTCAGAGTTGAAAACTATGCCAAATCTCCAGCCCATCAGTGCTCTTCCAACCAA
AACCCAAAAGGGAATACACAGTGGAACCTGGAAGCTGTCTCCACCCAGACTGATGGCCAACTCCCCTTCA
CACCTGTGCGAGATTGGCTCCCTAAAGGAAATCACGCTGTCCCCTGTGAGCGAGTCCCACAGTGAGGAGA
CGATCCCCAGCGACAGCGGCATTGGGACAGACAACAACAGCACTTCTGACCAAGCGGAGAAGAGCTCAGA
ATCCCGAAGGAGGTACTCTTTTGATTTCTGCTCCCTGGACAACCCGGAGGCCATTCCGTCCGACACCAGC
ACAAAGAACCGGCATGGCCACCGGCAAAAGCATCTCATTGTGGACAACTTTCTGGCCCACGAAAGCCTCA
AGAAGCCAAAGCACAAGAGGAAACGGAAAAGCCTGCAAAACCGCGATGACCTCCAGTTTCTGGCAGACCT
GGAGGAGCTAATCACCAAGTTCCAAGTGTTCAGAATCTCCCACCGGAGTTACACCTTCTACCACGAGAAT
CCATATCCCAGCATTTTTCGGATTAATTTTGATCACTATTACCCGGTGCCATATATCCAGTATGACCCGT
TGCTCTATCTTCGTAGGACTTCAGACTTGAAGTCAAAGAAGAAGCGTGGTAGGCCTGCAAAAACCAATGA
CACCATGACAAAGGTGCCTTTTTTACAAGGGTTCAGCTACCCTATTCCCAGTGGAAGTTACTATGCACCC
TATGGAATGCCTTACACATCAATGCCTATGATGAACCTTGGTTATTACGGTCAGTACCCAGCTCCTTTGT
ACCTATCGCACACGCTTGGAGCAGCTTCCCCATTCATGAGGCCAACAGTGCCACCACCTCAGTTCCACAC
AAACTCCCACGTAAAGATGTCCGGTGCAGCTAAGCATAAAGCCAAGCATGGAGTACACCTGCAGGGACCT
GTTAGCATGGGCCTTGGTGACATGCAGCCTTCTCTGAACCCTCCCAAGGTAGGCAGTGCCAGTCTGTCCA
GTGGTCGGCTCCATAAGAGGAAACACAAACACAAGCATAAGCACAAGGAAGACCGGATCCTAGGGACCCA
TGACAACCTGAGTGGTCTTTTTGCAGGCAAAGCCACAGGCTTCTCCAGCCACATCCTGAGCGAGCGGCTG
AGTAGCGCAGACAAAGAGCTCCCGCTGGTGAGTGAGAAGAACAAGCATAAGGAGAAACAGAAGCACCAGC
ACAGCGAAGCCGGCCACAAAGCTTCTAAGAACAACTTTGAGGTGGACACCCTGTCTACACTGTCACTTTC
CGACGCCCAGCATTGGACACAGGCCAAGGAAAAAGGAGACTTGAGCAGTGAGCCTGTGGACTCATGCACG
AAAAGATACTCTGGCAGTGGCGGGGATGGTGGCAGCACGAGATCAGAGAACCTGGACGTGTTCAGTGAAA
TGAACCCTTCGAATGACAAGTGGGACAGTGACGTGAGTGGGAGTAAAAGGAGGAGCTATGAAGGCTTTGG
AACGTACAGGGAAAAGGACATCCAAGCCTTCAAGATGAACCGCAAGGAGAGAAGTTCTTATGACTCCTCC
ATGTCTCCAGGGATGCCAAGTCCCCACTTAAAAGTGGACCAGACAGCAGTGCATAGTAAGAACGAAGGCT
CAGTGCCCACCATGATGACCAGGAAGAAGCCAGCCGCAGTTGACAGTGTTACAATTCCACCAGCCCCAGT
GTTATCTCTCCTTGCTGCATCTGCAGCAACGTCGGATGCAGTCGGCTCCTCCCTGAAGAAGAGGTTCAAG
CGGCGGGAGATCGAAGCCATCCAGTGCGAAGTGCGGAAGATGTGCAACTACACCAAGATCCTGTCCACCA
AGAAGAACCTGGACCACGTGAACAAGATCCTGAAGGCCAAGCGGCTGCAGAGACAATCAAAAACAGGCAA
CAACTTCGTGAAGAAGAGGCGCGGGCGTCCCAGGAAGCAGCCCACCCAGTTCGATGAGGACTCCAGAGAC
CAAATGCCGGTGCTGGAAAAATGCATCGACCTGCCCAGCAAAAGAGGCCAGAAGCCCAGCCTGAGCCCGC
TGGTGCTGGAGCCCGCCGCCAGCCAAGACACCATCATGGCCACCATCGAGGCGGTCATCCACATGGCCCG
GGAGGCGCCGCCCCTGCCCCCGCCACCGCCGCCGCCCCTGCCGCCACCGCCGCCACCACCCCTGCCCCCG
CCACCCCCTCTACCCAAGACCCCCCGAGGCGGAAAGAGGAAACACAAACCGCAGGCCCCCGCTCAGCCCC
CACAGCAGTCGCCCCCGCAGCAGCCCCTTCCCCAGGAAGAGGAGGTGAAAGCCAAAAGGCAGAGGAAGTC
CCGAGGGAGTGAGAGCGAGGTCCTTCCCTAG

Translation (1596 aa):
MESRETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEEDELGSGRDVD
SNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKITIKQSGDQK
VSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQAYERPQKHSTLHYDTGLPQDFTGDTLKPKH
QQKSSSQNHMDWSTNSDSGPVTQNCFISPESGRETASTSKIPALEPVASFAKAQGKKGSAGNTWSQLSNN
NKDLLLGGVAPSPSSHSSPAPPSSSAECNGLQPLVDQDGGGTKEPPEPPTVGSKKKSSKKDVISQTIPNP
DLDWVKNAQKAFDNTEGKREGYSADSAQEASPARQNVSSASNPENDSSHVRITIPIKAPSLDPTNHKRKK
RQSIKAVVEKIMPEKALASGITMSSEVVNRILSNSEGNKKDPRVPKLSKMIENESPSVGLETGGNAEKVI
PGGVSKPRKPPMVMTPPTCTDHSPSRKLPEIQHPKFAAKRRWTCSKPKPSTMLREAVMATSDKLMLEPPS
AYPITPSSPLYTNTDSLTVITPVKKKRGRPKKQPLLTVETIHEGTSTSPVSPISREFPGTKKRKRRRNLA
KLAQLVPGEDKPMSEMKFHKKVGKLGVLDKKTIKTINKMKTLKRKNILNQILSCSSSVALKAKAPPETSP
GAAAIESKLGKQINVSKRGTIYIGKKRGRKPRAELPPPSEEPKTAIKHPRPVSSQPDVPAVPSNFQSLVA
SSPAAMHPLSTQLGGSNGNLSPASTETNFSELKTMPNLQPISALPTKTQKGIHSGTWKLSPPRLMANSPS
HLCEIGSLKEITLSPVSESHSEETIPSDSGIGTDNNSTSDQAEKSSESRRRYSFDFCSLDNPEAIPSDTS
TKNRHGHRQKHLIVDNFLAHESLKKPKHKRKRKSLQNRDDLQFLADLEELITKFQVFRISHRSYTFYHEN
PYPSIFRINFDHYYPVPYIQYDPLLYLRRTSDLKSKKKRGRPAKTNDTMTKVPFLQGFSYPIPSGSYYAP
YGMPYTSMPMMNLGYYGQYPAPLYLSHTLGAASPFMRPTVPPPQFHTNSHVKMSGAAKHKAKHGVHLQGP
VSMGLGDMQPSLNPPKVGSASLSSGRLHKRKHKHKHKHKEDRILGTHDNLSGLFAGKATGFSSHILSERL
SSADKELPLVSEKNKHKEKQKHQHSEAGHKASKNNFEVDTLSTLSLSDAQHWTQAKEKGDLSSEPVDSCT
KRYSGSGGDGGSTRSENLDVFSEMNPSNDKWDSDVSGSKRRSYEGFGTYREKDIQAFKMNRKERSSYDSS
MSPGMPSPHLKVDQTAVHSKNEGSVPTMMTRKKPAAVDSVTIPPAPVLSLLAASAATSDAVGSSLKKRFK
RREIEAIQCEVRKMCNYTKILSTKKNLDHVNKILKAKRLQRQSKTGNNFVKKRRGRPRKQPTQFDEDSRD
QMPVLEKCIDLPSKRGQKPSLSPLVLEPAASQDTIMATIEAVIHMAREAPPLPPPPPPPLPPPPPPPLPP
PPPLPKTPRGGKRKHKPQAPAQPPQQSPPQQPLPQEEEVKAKRQRKSRGSESEVLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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