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Report for CCDS11897.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
11897.1 |
Public |
Homo sapiens |
18 |
DSG4 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:147409](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:11897.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:147409](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 18 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 11897.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000308128.9 |
ENSP00000311859.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000308128.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000311859.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000308128](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000311859](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_177986.5 |
NP_817123.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_177986.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_817123.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_177986](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_817123](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_817123.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_817123.1 |
1040 |
Q86SJ6-1 |
1040 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 11897.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3123 nt): ATGGATTGGCTCTTCTTCAGAAACATTTGCCTTTTGATCATTCTAATGGTGGTGATGGAAGTAAACAGTG AATTTATTGTTGAGGTGAAGGAATTTGACATTGAAAATGGCACTACAAAATGGCAAACAGTCAGAAGACA AAAGCGGGAGTGGATCAAGTTTGCCGCAGCCTGTCGAGAAGGAGAGGACAACTCGAAGAGGAACCCCATT GCCAAAATTCGATCAGACTGCGAATCGAACCAGAAGATAACATACCGGATTTCTGGAGTAGGGATTGATC GACCACCATATGGGGTATTCACCATTAATCCTCGCACTGGGGAAATTAACATCACTTCAGTGGTAGACAG AGAAATAACTCCACTTTTCTTGATCTATTGCCGGGCTCTGAATTCACGGGGTGAAGATTTAGAAAGGCCT CTTGAGCTTAGAGTCAAAGTTATGGACATAAATGATAACGCTCCAGTCTTTTCGCAAAGTGTATACACAG CCAGCATTGAAGAAAATAGTGATGCCAATACATTGGTAGTAAAGTTATGTGCCACAGATGCAGATGAAGA AAATCATCTGAATTCTAAAATTGCCTACAAGATCGTCTCTCAGGAGCCATCAGGTGCACCCATGTTCATT CTGAATAGGTACACTGGAGAAGTCTGCACCATGTCCAGTTTCTTGGACAGAGAGCAACACAGTATGTACA ACCTGGTTGTGAGAGGCTCAGATCGGGATGGAGCTGCAGATGGACTGTCTTCTGAGTGTGACTGTAGAAT CAAGGTTTTAGACGTCAACGATAATTTCCCCACCTTAGAGAAAACTTCATACTCAGCCAGTATTGAAGAG AATTGTTTAAGTTCGGAACTGATACGATTACAAGCAATTGATCTTGATGAAGAAGGCACTGATAACTGGT TGGCTCAATATTTAATTCTCTCTGGAAATGATGGGAATTGGTTCGATATTCAAACAGATCCACAAACCAA TGAAGGCATTTTGAAAGTTGTCAAGATGCTGGATTATGAACAAGCACCTAACATTCAGCTTAGTATCGGA GTTAAAAACCAAGCTGATTTTCACTACTCCGTTGCTTCTCAATTCCAAATGCACCCAACCCCTGTGAGAA TTCAAGTTGTTGATGTGAGAGAAGGACCTGCATTTCATCCAAGTACTATGGCTTTTAGTGTGCGGGAAGG AATAAAAGGAAGTTCCTTATTGAATTATGTGCTTGGCACATATACAGCCATAGATTTGGACACAGGAAAC CCTGCAACAGATGTCAGATATATCATAGGGCATGATGCAGGCAGCTGGTTAAAAATTGATTCAAGAACTG GTGAGATACAATTTTCTAGAGAATTTGATAAGAAGTCAAAATATATTATCAATGGGATATACACAGCAGA GATCCTGGCTATAGATGATGGCTCTGGAAAAACAGCTACAGGAACCATATGTATTGAGGTTCCTGATATC AATGATTATTGTCCAAACATTTTTCCTGAAAGAAGAACCATCTGCATTGACTCTCCATCAGTCCTTATCT CTGTTAATGAACATTCTTATGGGTCTCCGTTTACTTTCTGTGTTGTTGATGAGCCACCAGGAATAGCTGA CATGTGGGATGTCAGATCAACAAATGCTACCTCGGCAATCCTTACGGCTAAGCAGGTTTTATCTCCAGGA TTTTATGAAATCCCAATCCTGGTGAAGGACAGCTATAACAGAGCATGTGAATTGGCACAAATGGTGCAGT TATATGCCTGTGATTGCGATGACAACCACATGTGCCTGGACTCTGGTGCCGCGGGCATCTACACAGAGGA CATAACTGGTGACACGTATGGGCCTGTCACTGAAGACCAAGCTGGAGTTTCAAATGTTGGTCTTGGACCA GCAGGGATTGGCATGATGGTTCTGGGCATCCTGCTACTGATTTTGGCTCCACTCTTGCTGCTCCTGTGTT GCTGCAAACAGAGACAGCCAGAAGGCCTGGGAACAAGATTTGCTCCTGTGCCTGAGGGCGGAGAAGGAGT GATGCAGTCTTGGAGAATTGAAGGGGCCCATCCCGAGGACAGGGATGTGTCAAATATATGTGCACCCATG ACAGCCTCAAATACCCAGGATCGGATGGATTCCTCTGAAATCTACACCAACACCTATGCAGCCGGGGGCA CGGTGGAAGGAGGTGTATCGGGAGTGGAGCTCAACACAGGTATGGGGACAGCCGTTGGCCTCATGGCCGC AGGGGCCGCAGGAGCCTCAGGGGCCGCAAGGAAGAGGAGCTCTACCATGGGAACCCTGCGGGACTACGCT GACGCAGACATCAACATGGCTTTCTTGGACAGCTACTTCTCGGAGAAAGCGTATGCTTATGCAGATGAAG ATGAAGGTCGACCAGCCAATGACTGCTTGCTCATTTATGACCACGAGGGAGTCGGGTCTCCCGTAGGCTC TATTGGTTGTTGCAGTTGGATTGTGGATGACTTAGATGAAAGCTGCATGGAAACTTTAGATCCAAAATTT AGGACTCTTGCTGAGATCTGCTTAAACACAGAAATTGAACCATTTCCTTCACACCAGGCTTGTATACCAA TCAGTACTGACCTCCCTTTGCTCGGACCTAATTACTTTGTTAATGAATCTTCAGGATTGACTCCCTCAGA AGTTGAATTCCAAGAAGAAATGGCAGCATCTGAACCCGTGGTCCATGGGGATATTATTGTGACTGAGACT TACGGTAATGCTGATCCATGTGTGCAACCCACTACAATTATTTTTGATCCTCAGCTTGCACCCAATGTTG TAGTAACCGAAGCAGTAATGGCACCTGTCTATGATATTCAAGGGAATATTTGTGTACCTGCTGAGTTAGC AGATTACAACAATGTAATCTATGCTGAGAGAGTACTGGCTAGTCCTGGTGTGCCTGACATGAGCAATAGT AGCACGACTGAGGGTTGTATGGGACCTGTGATGAGCGGCAATATTTTAGTAGGGCCAGAAATTCAAGTGA TGCAAATGATGAGTCCAGACCTTCCCATAGGCCAAACCGTTGGCTCCACATCCCCCATGACATCTCGACA CAGAGTAACACGATACAGTAACATACATTACACCCAACAGTAA
Translation (1040 aa): MDWLFFRNICLLIILMVVMEVNSEFIVEVKEFDIENGTTKWQTVRRQKREWIKFAAACREGEDNSKRNPI AKIRSDCESNQKITYRISGVGIDRPPYGVFTINPRTGEINITSVVDREITPLFLIYCRALNSRGEDLERP LELRVKVMDINDNAPVFSQSVYTASIEENSDANTLVVKLCATDADEENHLNSKIAYKIVSQEPSGAPMFI LNRYTGEVCTMSSFLDREQHSMYNLVVRGSDRDGAADGLSSECDCRIKVLDVNDNFPTLEKTSYSASIEE NCLSSELIRLQAIDLDEEGTDNWLAQYLILSGNDGNWFDIQTDPQTNEGILKVVKMLDYEQAPNIQLSIG VKNQADFHYSVASQFQMHPTPVRIQVVDVREGPAFHPSTMAFSVREGIKGSSLLNYVLGTYTAIDLDTGN PATDVRYIIGHDAGSWLKIDSRTGEIQFSREFDKKSKYIINGIYTAEILAIDDGSGKTATGTICIEVPDI NDYCPNIFPERRTICIDSPSVLISVNEHSYGSPFTFCVVDEPPGIADMWDVRSTNATSAILTAKQVLSPG FYEIPILVKDSYNRACELAQMVQLYACDCDDNHMCLDSGAAGIYTEDITGDTYGPVTEDQAGVSNVGLGP AGIGMMVLGILLLILAPLLLLLCCCKQRQPEGLGTRFAPVPEGGEGVMQSWRIEGAHPEDRDVSNICAPM TASNTQDRMDSSEIYTNTYAAGGTVEGGVSGVELNTGMGTAVGLMAAGAAGASGAARKRSSTMGTLRDYA DADINMAFLDSYFSEKAYAYADEDEGRPANDCLLIYDHEGVGSPVGSIGCCSWIVDDLDESCMETLDPKF RTLAEICLNTEIEPFPSHQACIPISTDLPLLGPNYFVNESSGLTPSEVEFQEEMAASEPVVHGDIIVTET YGNADPCVQPTTIIFDPQLAPNVVVTEAVMAPVYDIQGNICVPAELADYNNVIYAERVLASPGVPDMSNS STTEGCMGPVMSGNILVGPEIQVMQMMSPDLPIGQTVGSTSPMTSRHRVTRYSNIHYTQQ
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