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Report for CCDS11897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11897.1 Public Homo sapiens 18 DSG4 24 110 108 CCDS HistoryNCBI Gene:147409Re-query CCDS DB by CCDS ID:11897.1Re-query CCDS DB by GeneID:147409See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11897.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308128.9 ENSP00000311859.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308128.9Link to Ensembl Protein Viewer:ENSP00000311859.4Re-query CCDS DB by Nucleotide ID:ENST00000308128Re-query CCDS DB by Protein ID:ENSP00000311859
Original member Current member NCBI NM_177986.5 NP_817123.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177986.5Link to Protein Sequence:NP_817123.1Re-query CCDS DB by Nucleotide ID:NM_177986Re-query CCDS DB by Protein ID:NP_817123Link to BLAST:NP_817123.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_817123.1 1040 Q86SJ6-1 1040 100% 0 0

Chromosomal Locations for CCDS 11897.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31376912 31376959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31385136 31385171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31386688 31386819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31388367 31388522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31388874 31389018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31390656 31390822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31391078 31391212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31392155 31392340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31399272 31399543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31400881 31401020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31403416 31403634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31406077 31406373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31409452 31409591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31409745 31409808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31411231 31411448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31412828 31413595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3123 nt):
ATGGATTGGCTCTTCTTCAGAAACATTTGCCTTTTGATCATTCTAATGGTGGTGATGGAAGTAAACAGTG
AATTTATTGTTGAGGTGAAGGAATTTGACATTGAAAATGGCACTACAAAATGGCAAACAGTCAGAAGACA
AAAGCGGGAGTGGATCAAGTTTGCCGCAGCCTGTCGAGAAGGAGAGGACAACTCGAAGAGGAACCCCATT
GCCAAAATTCGATCAGACTGCGAATCGAACCAGAAGATAACATACCGGATTTCTGGAGTAGGGATTGATC
GACCACCATATGGGGTATTCACCATTAATCCTCGCACTGGGGAAATTAACATCACTTCAGTGGTAGACAG
AGAAATAACTCCACTTTTCTTGATCTATTGCCGGGCTCTGAATTCACGGGGTGAAGATTTAGAAAGGCCT
CTTGAGCTTAGAGTCAAAGTTATGGACATAAATGATAACGCTCCAGTCTTTTCGCAAAGTGTATACACAG
CCAGCATTGAAGAAAATAGTGATGCCAATACATTGGTAGTAAAGTTATGTGCCACAGATGCAGATGAAGA
AAATCATCTGAATTCTAAAATTGCCTACAAGATCGTCTCTCAGGAGCCATCAGGTGCACCCATGTTCATT
CTGAATAGGTACACTGGAGAAGTCTGCACCATGTCCAGTTTCTTGGACAGAGAGCAACACAGTATGTACA
ACCTGGTTGTGAGAGGCTCAGATCGGGATGGAGCTGCAGATGGACTGTCTTCTGAGTGTGACTGTAGAAT
CAAGGTTTTAGACGTCAACGATAATTTCCCCACCTTAGAGAAAACTTCATACTCAGCCAGTATTGAAGAG
AATTGTTTAAGTTCGGAACTGATACGATTACAAGCAATTGATCTTGATGAAGAAGGCACTGATAACTGGT
TGGCTCAATATTTAATTCTCTCTGGAAATGATGGGAATTGGTTCGATATTCAAACAGATCCACAAACCAA
TGAAGGCATTTTGAAAGTTGTCAAGATGCTGGATTATGAACAAGCACCTAACATTCAGCTTAGTATCGGA
GTTAAAAACCAAGCTGATTTTCACTACTCCGTTGCTTCTCAATTCCAAATGCACCCAACCCCTGTGAGAA
TTCAAGTTGTTGATGTGAGAGAAGGACCTGCATTTCATCCAAGTACTATGGCTTTTAGTGTGCGGGAAGG
AATAAAAGGAAGTTCCTTATTGAATTATGTGCTTGGCACATATACAGCCATAGATTTGGACACAGGAAAC
CCTGCAACAGATGTCAGATATATCATAGGGCATGATGCAGGCAGCTGGTTAAAAATTGATTCAAGAACTG
GTGAGATACAATTTTCTAGAGAATTTGATAAGAAGTCAAAATATATTATCAATGGGATATACACAGCAGA
GATCCTGGCTATAGATGATGGCTCTGGAAAAACAGCTACAGGAACCATATGTATTGAGGTTCCTGATATC
AATGATTATTGTCCAAACATTTTTCCTGAAAGAAGAACCATCTGCATTGACTCTCCATCAGTCCTTATCT
CTGTTAATGAACATTCTTATGGGTCTCCGTTTACTTTCTGTGTTGTTGATGAGCCACCAGGAATAGCTGA
CATGTGGGATGTCAGATCAACAAATGCTACCTCGGCAATCCTTACGGCTAAGCAGGTTTTATCTCCAGGA
TTTTATGAAATCCCAATCCTGGTGAAGGACAGCTATAACAGAGCATGTGAATTGGCACAAATGGTGCAGT
TATATGCCTGTGATTGCGATGACAACCACATGTGCCTGGACTCTGGTGCCGCGGGCATCTACACAGAGGA
CATAACTGGTGACACGTATGGGCCTGTCACTGAAGACCAAGCTGGAGTTTCAAATGTTGGTCTTGGACCA
GCAGGGATTGGCATGATGGTTCTGGGCATCCTGCTACTGATTTTGGCTCCACTCTTGCTGCTCCTGTGTT
GCTGCAAACAGAGACAGCCAGAAGGCCTGGGAACAAGATTTGCTCCTGTGCCTGAGGGCGGAGAAGGAGT
GATGCAGTCTTGGAGAATTGAAGGGGCCCATCCCGAGGACAGGGATGTGTCAAATATATGTGCACCCATG
ACAGCCTCAAATACCCAGGATCGGATGGATTCCTCTGAAATCTACACCAACACCTATGCAGCCGGGGGCA
CGGTGGAAGGAGGTGTATCGGGAGTGGAGCTCAACACAGGTATGGGGACAGCCGTTGGCCTCATGGCCGC
AGGGGCCGCAGGAGCCTCAGGGGCCGCAAGGAAGAGGAGCTCTACCATGGGAACCCTGCGGGACTACGCT
GACGCAGACATCAACATGGCTTTCTTGGACAGCTACTTCTCGGAGAAAGCGTATGCTTATGCAGATGAAG
ATGAAGGTCGACCAGCCAATGACTGCTTGCTCATTTATGACCACGAGGGAGTCGGGTCTCCCGTAGGCTC
TATTGGTTGTTGCAGTTGGATTGTGGATGACTTAGATGAAAGCTGCATGGAAACTTTAGATCCAAAATTT
AGGACTCTTGCTGAGATCTGCTTAAACACAGAAATTGAACCATTTCCTTCACACCAGGCTTGTATACCAA
TCAGTACTGACCTCCCTTTGCTCGGACCTAATTACTTTGTTAATGAATCTTCAGGATTGACTCCCTCAGA
AGTTGAATTCCAAGAAGAAATGGCAGCATCTGAACCCGTGGTCCATGGGGATATTATTGTGACTGAGACT
TACGGTAATGCTGATCCATGTGTGCAACCCACTACAATTATTTTTGATCCTCAGCTTGCACCCAATGTTG
TAGTAACCGAAGCAGTAATGGCACCTGTCTATGATATTCAAGGGAATATTTGTGTACCTGCTGAGTTAGC
AGATTACAACAATGTAATCTATGCTGAGAGAGTACTGGCTAGTCCTGGTGTGCCTGACATGAGCAATAGT
AGCACGACTGAGGGTTGTATGGGACCTGTGATGAGCGGCAATATTTTAGTAGGGCCAGAAATTCAAGTGA
TGCAAATGATGAGTCCAGACCTTCCCATAGGCCAAACCGTTGGCTCCACATCCCCCATGACATCTCGACA
CAGAGTAACACGATACAGTAACATACATTACACCCAACAGTAA

Translation (1040 aa):
MDWLFFRNICLLIILMVVMEVNSEFIVEVKEFDIENGTTKWQTVRRQKREWIKFAAACREGEDNSKRNPI
AKIRSDCESNQKITYRISGVGIDRPPYGVFTINPRTGEINITSVVDREITPLFLIYCRALNSRGEDLERP
LELRVKVMDINDNAPVFSQSVYTASIEENSDANTLVVKLCATDADEENHLNSKIAYKIVSQEPSGAPMFI
LNRYTGEVCTMSSFLDREQHSMYNLVVRGSDRDGAADGLSSECDCRIKVLDVNDNFPTLEKTSYSASIEE
NCLSSELIRLQAIDLDEEGTDNWLAQYLILSGNDGNWFDIQTDPQTNEGILKVVKMLDYEQAPNIQLSIG
VKNQADFHYSVASQFQMHPTPVRIQVVDVREGPAFHPSTMAFSVREGIKGSSLLNYVLGTYTAIDLDTGN
PATDVRYIIGHDAGSWLKIDSRTGEIQFSREFDKKSKYIINGIYTAEILAIDDGSGKTATGTICIEVPDI
NDYCPNIFPERRTICIDSPSVLISVNEHSYGSPFTFCVVDEPPGIADMWDVRSTNATSAILTAKQVLSPG
FYEIPILVKDSYNRACELAQMVQLYACDCDDNHMCLDSGAAGIYTEDITGDTYGPVTEDQAGVSNVGLGP
AGIGMMVLGILLLILAPLLLLLCCCKQRQPEGLGTRFAPVPEGGEGVMQSWRIEGAHPEDRDVSNICAPM
TASNTQDRMDSSEIYTNTYAAGGTVEGGVSGVELNTGMGTAVGLMAAGAAGASGAARKRSSTMGTLRDYA
DADINMAFLDSYFSEKAYAYADEDEGRPANDCLLIYDHEGVGSPVGSIGCCSWIVDDLDESCMETLDPKF
RTLAEICLNTEIEPFPSHQACIPISTDLPLLGPNYFVNESSGLTPSEVEFQEEMAASEPVVHGDIIVTET
YGNADPCVQPTTIIFDPQLAPNVVVTEAVMAPVYDIQGNICVPAELADYNNVIYAERVLASPGVPDMSNS
STTEGCMGPVMSGNILVGPEIQVMQMMSPDLPIGQTVGSTSPMTSRHRVTRYSNIHYTQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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