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Report for CCDS11827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11827.1 Public Homo sapiens 18 NDC80 24 110 108 CCDS HistoryNCBI Gene:10403Re-query CCDS DB by CCDS ID:11827.1Re-query CCDS DB by GeneID:10403See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11827.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261597.9 ENSP00000261597.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261597.9Link to Ensembl Protein Viewer:ENSP00000261597.4Re-query CCDS DB by Nucleotide ID:ENST00000261597Re-query CCDS DB by Protein ID:ENSP00000261597
Original member Current member NCBI NM_006101.3 NP_006092.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006101.3Link to Protein Sequence:NP_006092.1Re-query CCDS DB by Nucleotide ID:NM_006101Re-query CCDS DB by Protein ID:NP_006092Link to BLAST:NP_006092.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006092.1 642 O14777 642 100% 0 0

Chromosomal Locations for CCDS 11827.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 2572986 2573086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2574989 2575066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2577746 2577869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2577969 2578141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2578927 2579029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2585113 2585202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2587830 2587923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2589204 2589310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2590018 2590162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2595416 2595621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2599019 2599171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2601396 2601485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2606415 2606507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2608700 2608830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2610759 2610861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2616437 2616574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGAAGCGCAGTTCAGTTTCCAGCGGTGGTGCTGGCCGCCTCTCCATGCAGGAGTTAAGATCCCAGGATG
TA
AATAAACAAGGCCTCTATACCCCTCAAACCAAAGAGAAACCAACCTTTGGAAAGTTGAGTATAAACAA
A
CCGACATCTGAAAGAAAAGTCTCGCTATTTGGCAAAAGAACTAGTGGACATGGATCCCGGAATAGTCAA
CTT
GGTATATTTTCCAGTTCTGAGAAAATCAAGGACCCGAGACCACTTAATGACAAAGCATTCATTCAGC
AG
TGTATTCGACAACTCTGTGAGTTTCTTACAGAAAATGGTTATGCACATAATGTGTCCATGAAATCTCT
A
CAAGCTCCCTCTGTTAAAGACTTCCTGAAGATCTTCACATTTCTTTATGGCTTCCTGTGCCCCTCATAC
GAA
CTTCCTGACACAAAGTTTGAAGAAGAGGTTCCAAGAATCTTTAAAGACCTTGGGTATCCTTTTGCAC
TA
TCCAAAAGCTCCATGTACACAGTGGGGGCTCCTCATACATGGCCTCACATTGTGGCAGCCTTAGTTTG
G
CTAATAGACTGCATCAAGATACATACTGCCATGAAAGAAAGCTCACCTTTATTTGATGATGGGCAGCCT
TGG
GGAGAAGAAACTGAAGATGGAATTATGCATAATAAGTTGTTTTTGGACTACACCATAAAATGCTATG
AG
AGTTTTATGAGTGGTGCCGACAGCTTTGATGAGATGAATGCAGAGCTGCAGTCAAAACTGAAGGATTT
A
TTTAATGTGGATGCTTTTAAGCTGGAATCATTAGAAGCAAAAAACAGAGCATTGAATGAACAGATTGCA
AGA
TTGGAACAAGAAAGAGAAAAAGAACCGAATCGTCTAGAGTCGTTGAGAAAACTGAAGGCTTCCTTAC
AA
GGAGATGTTCAAAAGTATCAGGCATACATGAGCAATTTGGAGTCTCATTCAGCCATTCTTGACCAGAA
A
TTAAATGGTCTCAATGAGGAAATTGCTAGAGTAGAACTAGAATGTGAAACAATAAAACAGGAGAACACT
CGA
CTACAGAATATCATTGACAACCAGAAGTACTCAGTTGCAGACATTGAGCGAATAAATCATGAAAGAA
AT
GAATTGCAGCAGACTATTAATAAATTAACCAAGGACCTGGAAGCTGAACAACAGAAGTTGTGGAATGA
G
GAGTTAAAATATGCCAGAGGCAAAGAAGCGATTGAAACACAATTAGCAGAGTATCACAAATTGGCTAGA
AAA
TTAAAACTTATTCCTAAAGGTGCTGAGAATTCCAAAGGTTATGACTTTGAAATTAAGTTTAATCCCG
AG
GCTGGTGCCAACTGCCTTGTCAAATACAGGGCTCAAGTTTATGTACCTCTTAAGGAACTCCTGAATGA
A
ACTGAAGAAGAAATTAATAAAGCCCTAAATAAAAAAATGGGTTTGGAGGATACTTTAGAACAATTGAAT
GCA
ATGATAACAGAAAGCAAGAGAAGTGTGAGAACTCTGAAAGAAGAAGTTCAAAAGCTGGATGATCTTT
AC
CAACAAAAAATTAAGGAAGCAGAGGAAGAGGATGAAAAATGTGCCAGTGAGCTTGAGTCCTTGGAGAA
A
CACAAGCACCTGCTAGAAAGTACTGTTAACCAGGGGCTCAGTGAAGCTATGAATGAATTAGATGCTGTT
CAG
CGGGAATACCAACTAGTTGTGCAAACCACGACTGAAGAAAGACGAAAAGTGGGAAATAACTTGCAAC
GT
CTGTTAGAGATGGTTGCTACACATGTTGGGTCTGTAGAGAAACATCTTGAGGAGCAGATTGCTAAAGT
T
GATAGAGAATATGAAGAATGCATGTCAGAAGATCTCTCGGAAAATATTAAAGAGATTAGAGATAAGTAT
GAG
AAGAAAGCTACTCTAATTAAGTCTTCTGAAGAATGA


Translation (642 aa):
MKRSSVSSGGAGRLSMQELRSQDVNKQGLYTPQTKEKPTFGKLSINKPTSERKVSLFGKRTSGHGSRNSQ
L
GIFSSSEKIKDPRPLNDKAFIQQCIRQLCE
FLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSY
E
LPDTKFEEEVPRIFKDL
GYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQP
W
GEETEDGIMHNK
LFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIA
R
LEQEREKEP
NRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENT
R
LQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEA
IETQLAEYHKLAR
K
LKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVY
VPLKELLNETEEEINKALNKKMGLEDTLEQLN
A
MITESKRSVRTLKEEVQKLDDLYQQKIK
EAEEEDEKCASELESLEKHKHLLESTVNQGLSEAMNELDAV
Q
R
EYQLVVQTTTEERRKVGNNLQRLLEMVATHVGSVEKHLEEQIAKVDREYEECMSEDLSENIKEIRDKY
E
KKATLIKSSEE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser