NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11760.1 Public Homo sapiens 17 CANT1 24 110 108 CCDS HistoryNCBI Gene:124583Re-query CCDS DB by CCDS ID:11760.1Re-query CCDS DB by GeneID:124583See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11760.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302345.6 ENSP00000307674.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000302345.6Link to Ensembl Protein Viewer:ENSP00000307674.2Re-query CCDS DB by Nucleotide ID:ENST00000302345Re-query CCDS DB by Protein ID:ENSP00000307674
Original member Current member EBI ENST00000392446.10 ENSP00000376241.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392446.10Link to Ensembl Protein Viewer:ENSP00000376241.4Re-query CCDS DB by Nucleotide ID:ENST00000392446Re-query CCDS DB by Protein ID:ENSP00000376241
Original member Current member EBI ENST00000591773.5 ENSP00000467437.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591773.5Link to Ensembl Protein Viewer:ENSP00000467437.1Re-query CCDS DB by Nucleotide ID:ENST00000591773Re-query CCDS DB by Protein ID:ENSP00000467437
Original member Current member EBI ENST00000620915.4 ENSP00000477798.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620915.4Link to Ensembl Protein Viewer:ENSP00000477798.1Re-query CCDS DB by Nucleotide ID:ENST00000620915Re-query CCDS DB by Protein ID:ENSP00000477798
Original member Current member NCBI NM_001159772.2 NP_001153244.1 Accepted alive Link to Nucleotide Sequence:NM_001159772.2Link to Protein Sequence:NP_001153244.1Re-query CCDS DB by Nucleotide ID:NM_001159772Re-query CCDS DB by Protein ID:NP_001153244Link to BLAST:NP_001153244.1
Original member Current member NCBI NM_001159773.2 NP_001153245.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001159773.2Link to Protein Sequence:NP_001153245.1Re-query CCDS DB by Nucleotide ID:NM_001159773Re-query CCDS DB by Protein ID:NP_001153245Link to BLAST:NP_001153245.1
Original member Current member NCBI NM_138793.4 NP_620148.1 Accepted alive Link to Nucleotide Sequence:NM_138793.4Link to Protein Sequence:NP_620148.1Re-query CCDS DB by Nucleotide ID:NM_138793Re-query CCDS DB by Protein ID:NP_620148Link to BLAST:NP_620148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153244.1 401 Q8WVQ1-1 401 100% 0 0
NP_001153245.1 401 Q8WVQ1-1 401 100% 0 0
NP_620148.1 401 Q8WVQ1-1 401 100% 0 0

Chromosomal Locations for CCDS 11760.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78993550 78993920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78995018 78995221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78996992 78997622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGCCCGTGCAGCTGTCTGAGCACCCGGAATGGAATGAGTCTATGCACTCCCTCCGGATCAGTGTGGGGG
GCCTTCCTGTGCTGGCGTCCATGACCAAGGCCGCGGACCCCCGCTTCCGCCCCCGCTGGAAGGTGATCCT
GACGTTCTTTGTGGGTGCTGCCATCCTCTGGCTGCTCTGCTCCCACCGCCCGGCCCCCGGCAGGCCCCCC
ACCCACAATGCACACAACTGGAGGCTCGGCCAGGCGCCCGCCAACTGGTACAATGACACCTACCCCCTGT
CTCCCCCACAAAGGACACCGGCTGGGATTCGGTATCGAATCGCAGTTATCGCAGACCTGGACACAGAGTC
AAGGGCCCAAGAGGAAAACACCTGGTTCAGTTACCTGAAAAAGGGCTACCTGACCCTGTCAGACAGTGGG
GACAAGGTGGCCGTGGAATGGGACAAAGACCATGGGGTCCTGGAGTCCCACCTGGCGGAGAAGGGGAGAG
GCATGGAGCTATCCGACCTGATTGTTTTCAATGGGAAACTCTACTCCGTGGATGACCGGACGGGGGTCGT
CTACCAGATCGAAGGCAGCAAAGCCGTGCCCTGGGTGATTCTGTCCGACGGCGACGGCACCGTGGAGAAA
GGCTTCAAGGCCGAATGGCTGGCAGTGAAGGACGAGCGTCTGTACGTGGGCGGCCTGGGCAAGGAGTGGA
CGACCACTACGGGTGATGTGGTGAACGAGAACCCGGAGTGGGTGAAGGTGGTGGGCTACAAGGGCAGCGT
GGACCACGAGAACTGGGTGTCCAACTACAACGCCCTGCGGGCTGCTGCCGGCATCCAGCCGCCAGGCTAC
CTCATCCATGAGTCTGCCTGCTGGAGTGACACGCTGCAGCGCTGGTTCTTCCTGCCGCGCCGCGCCAGCC
AGGAGCGCTACAGCGAGAAGGACGACGAGCGCAAGGGCGCCAACCTGCTGCTGAGCGCCTCCCCTGACTT
CGGCGACATCGCTGTGAGCCACGTCGGGGCGGTGGTCCCCACTCACGGCTTCTCGTCCTTCAAGTTCATC
CCCAACACCGACGACCAGATCATTGTGGCCCTCAAATCCGAGGAGGACAGCGGCAGAGTCGCCTCCTACA
TCATGGCCTTCACGCTGGACGGGCGCTTCCTGTTGCCGGAGACCAAGATCGGAAGCGTGAAATACGAAGG
CATCGAGTTCATTTAA

Translation (401 aa):
MPVQLSEHPEWNESMHSLRISVGGLPVLASMTKAADPRFRPRWKVILTFFVGAAILWLLCSHRPAPGRPP
THNAHNWRLGQAPANWYNDTYPLSPPQRTPAGIRYRIAVIADLDTESRAQEENTWFSYLKKGYLTLSDSG
DKVAVEWDKDHGVLESHLAEKGRGMELSDLIVFNGKLYSVDDRTGVVYQIEGSKAVPWVILSDGDGTVEK
GFKAEWLAVKDERLYVGGLGKEWTTTTGDVVNENPEWVKVVGYKGSVDHENWVSNYNALRAAAGIQPPGY
LIHESACWSDTLQRWFFLPRRASQERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPTHGFSSFKFI
PNTDDQIIVALKSEEDSGRVASYIMAFTLDGRFLLPETKIGSVKYEGIEFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH