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Report for CCDS11698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11698.1 Public Homo sapiens 17 GPR142 24 110 108 CCDS HistoryNCBI Gene:350383Re-query CCDS DB by CCDS ID:11698.1Re-query CCDS DB by GeneID:350383See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11698.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335666.4 ENSP00000335158.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335666.4Link to Ensembl Protein Viewer:ENSP00000335158.4Re-query CCDS DB by Nucleotide ID:ENST00000335666Re-query CCDS DB by Protein ID:ENSP00000335158
Original member Current member NCBI NM_181790.1 NP_861455.1 Accepted alive Link to Nucleotide Sequence:NM_181790.1Link to Protein Sequence:NP_861455.1Re-query CCDS DB by Nucleotide ID:NM_181790Re-query CCDS DB by Protein ID:NP_861455Link to BLAST:NP_861455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861455.1 462 Q7Z601 462 100% 0 0

Chromosomal Locations for CCDS 11698.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74367506 74367748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74369468 74369582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74370521 74370679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74371729 74372600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGAGTATTATGATGTTGCCCATGGAGCAAAAGATCCAGTGGGTCCCCACTTCCCTGCAGGACATCACTG
CTGTCCTGGGTACAGAAGCATATACTGAGGAAGACAAATCAATGGTGTCCCATGCACAGAAAAGCCAGCA
TTCTTGTCTCAGCCATTCCAGGTGGCTGAGGTCTCCACAGGTCACAGGGGGAAGCTGGGACCTCCGAATA
AGGCCATCCAAGGACTCCAGCAGTTTCCGCCAGGCTCAGTGTCTGCGTAAGGATCCTGGGGCAAACAACC
ACTTGGAGAGCCAAGGGGTGAGAGGTACAGCTGGCGATGCTGACAGGGAGCTGCGGGGACCCTCAGAAAA
AGCCACAGCTGGCCAGCCACGAGTGACCCTGCTGCCCACGCCCCACGTCAGCGGGCTGAGCCAGGAGTTT
GAAAGCCACTGGCCAGAGATCGCAGAGAGGTCCCCGTGTGTGGCTGGCGTCATCCCTGTCATCTACTACA
GTGTCCTGCTGGGCTTGGGGCTGCCTGTCAGCCTCCTGACCGCAGTGGCCCTGGCGCGCCTTGCCACCAG
GACCAGGAGGCCCTCCTACTACTACCTTCTGGCGCTCACAGCCTCGGATATCATCATCCAGGTGGTCATC
GTGTTCGCGGGCTTCCTCCTGCAGGGAGCAGTGCTGGCCCGCCAGGTGCCCCAGGCTGTGGTGCGCACGG
CCAACATCCTGGAGTTTGCTGCCAACCACGCCTCAGTCTGGATCGCCATCCTGCTCACGGTTGACCGCTA
CACTGCCCTGTGCCACCCCCTGCACCATCGGGCCGCCTCGTCCCCAGGCCGGACCCGCCGGGCCATTGCT
GCTGTCCTGAGTGCTGCCCTGTTGACCGGCATCCCCTTCTACTGGTGGCTGGACATGTGGAGAGACACCG
ACTCACCCAGAACACTGGACGAGGTCCTCAAGTGGGCTCACTGTCTCACTGTCTATTTCATCCCTTGTGG
CGTGTTCCTGGTCACCAACTCGGCCATCATCCACCGGCTACGGAGGAGGGGCCGGAGTGGGCTGCAGCCC
CGGGTGGGCAAGAGCACAGCCATCCTCCTGGGCATCACCACACTGTTCACCCTCCTGTGGGCGCCCCGGG
TCTTCGTCATGCTCTACCACATGTACGTGGCCCCTGTCCACCGGGACTGGAGGGTCCACCTGGCCTTGGA
TGTGGCCAATATGGTGGCCATGCTCCACACGGCAGCCAACTTCGGCCTCTACTGCTTTGTCAGCAAGACT
TTCCGGGCCACTGTCCGACAGGTCATCCACGATGCCTACCTGCCCTGCACTTTGGCATCACAGCCAGAGG
GCATGGCGGCGAAGCCTGTGATGGAGCCTCCGGGACTCCCCACAGGGGCAGAAGTGTAG

Translation (462 aa):
MSIMMLPMEQKIQWVPTSLQDITAVLGTEAYTEEDKSMVSHAQKSQHSCLSHSRWLRSPQVTGGSWDLRI
RPSKDSSSFRQAQCLRKDPGANNHLESQGVRGTAGDADRELRGPSEKATAGQPRVTLLPTPHVSGLSQEF
ESHWPEIAERSPCVAGVIPVIYYSVLLGLGLPVSLLTAVALARLATRTRRPSYYYLLALTASDIIIQVVI
VFAGFLLQGAVLARQVPQAVVRTANILEFAANHASVWIAILLTVDRYTALCHPLHHRAASSPGRTRRAIA
AVLSAALLTGIPFYWWLDMWRDTDSPRTLDEVLKWAHCLTVYFIPCGVFLVTNSAIIHRLRRRGRSGLQP
RVGKSTAILLGITTLFTLLWAPRVFVMLYHMYVAPVHRDWRVHLALDVANMVAMLHTAANFGLYCFVSKT
FRATVRQVIHDAYLPCTLASQPEGMAAKPVMEPPGLPTGAEV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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