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Report for CCDS11582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11582.1 Public Homo sapiens 17 TOM1L1 24 110 108 CCDS HistoryNCBI Gene:10040Re-query CCDS DB by CCDS ID:11582.1Re-query CCDS DB by GeneID:10040See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11582.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000575882.6 ENSP00000460823.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000575882.6Link to Ensembl Protein Viewer:ENSP00000460823.1Re-query CCDS DB by Nucleotide ID:ENST00000575882Re-query CCDS DB by Protein ID:ENSP00000460823
Original member Current member NCBI NM_005486.3 NP_005477.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005486.3Link to Protein Sequence:NP_005477.2Re-query CCDS DB by Nucleotide ID:NM_005486Re-query CCDS DB by Protein ID:NP_005477Link to BLAST:NP_005477.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005477.2 476 O75674-1 476 100% 0 0

Chromosomal Locations for CCDS 11582.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 54900866 54900923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54903708 54903792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54905489 54905567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54912666 54912815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54913748 54913873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54914639 54914743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54915746 54915862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54930073 54930206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54936649 54936709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54937109 54937226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54938924 54939020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54947261 54947312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54949518 54949623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54950045 54950126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54960566 54960626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCGTTTGGCAAGAGTCACCGGGATCCCTACGCGACCTCCGTGGGCCACCTCATAGAAAAGGCTACAT
TTGCTGGAGTTCAGACTGAAGATTGGGGCCAGTTCATGCACATCTGTGACATAATTAACACTACCCAGGA
TGGGCCAAAAGATGCAGTGAAAGCTTTGAAGAAAAGGATTTCCAAAAACTACAATCATAAAGAAATCCAA
CTTACCTTGTCACTTATTGACATGTGTGTGCAGAACTGTGGTCCAAGTTTCCAGTCTCTGATTGTGAAGA
AGGAATTTGTTAAAGAGAATTTAGTTAAGCTACTGAATCCCAGATACAACTTGCCATTAGACATTCAGAA
TAGAATCTTGAATTTCATTAAGACTTGGTCACAGGGCTTCCCAGGAGGTGTGGATGTAAGCGAAGTCAAA
GAAGTATACCTCGACCTGGTTAAGAAAGGCGTTCAGTTTCCTCCCTCAGAAGCAGAGGCTGAAACAGCAA
GACAAGAGACTGCTCAAATCTCATCAAATCCTCCAACATCTGTCCCTACTGCACCAGCTCTTTCTTCTGT
AATTGCTCCAAAGAACTCGACTGTTACATTGGTCCCAGAACAGATTGGAAAACTGCACAGTGAATTGGAT
ATGGTGAAAATGAATGTGCGAGTGATGTCCGCCATATTGATGGAGAATACTCCTGGGTCTGAAAACCATG
AAGACATAGAGCTTCTGCAGAAACTCTATAAAACAGGTCGGGAGATGCAGGAGAGGATCATGGACCTGCT
TGTGGTGGTGGAGAACGAAGATGTAACTGTTGAGCTAATTCAGGTGAATGAGGATTTGAATAATGCTATC
CTTGGATATGAGAGGTTTACTAGAAACCAACAAAGGATTTTGGAGCAAAATAAGAACCAGAAGGAAGCCA
CCAATACTACCAGTGAGCCTTCTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCCCGGATGCC
TAGGGCCACTCTGGGAGAACTCAACACCATGAATAATCAACTTTCAGGCTTAAATTTCAGCCTTCCAAGT
TCTGATGTAACAAACAACTTAAAACCCAGTCTTCATCCACAGATGAACTTGCTAGCCTTGGAGAATACAG
AGATACCCCCGTTTGCCCAAAGGACCAGCCAAAACCTCACCTCAAGCCACGCATATGATAATTTTCTGGA
ACATTCAAATTCAGTGTTTCTACAGCCAGTTAGTCTACAAACCATTGCAGCAGCACCATCAAACCAGAGT
CTGCCACCTTTGCCCAGCAATCATCCAGCGATGACAAAAAGTGATCTCCAGCCACCTAATTACTACGAGG
TAATGGAGTTTGATCCCTTAGCTCCTGCTGTCACTACAGAAGCTATTTATGAAGAAATTGATGCTCACCA
GCACAAAGGAGCTCAAAATGATGGTGACTGA

Translation (476 aa):
MAFGKSHRDPYATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQ
LTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVK
EVYLDLVKKGVQFPPSEAEAETARQETAQISSNPPTSVPTAPALSSVIAPKNSTVTLVPEQIGKLHSELD
MVKMNVRVMSAILMENTPGSENHEDIELLQKLYKTGREMQERIMDLLVVVENEDVTVELIQVNEDLNNAI
LGYERFTRNQQRILEQNKNQKEATNTTSEPSAPSQDLLDLSPSPRMPRATLGELNTMNNQLSGLNFSLPS
SDVTNNLKPSLHPQMNLLALENTEIPPFAQRTSQNLTSSHAYDNFLEHSNSVFLQPVSLQTIAAAPSNQS
LPPLPSNHPAMTKSDLQPPNYYEVMEFDPLAPAVTTEAIYEEIDAHQHKGAQNDGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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