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Report for CCDS11548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11548.1 Public Homo sapiens 17 PHB1 24 110 108 CCDS HistoryNCBI Gene:5245Re-query CCDS DB by CCDS ID:11548.1Re-query CCDS DB by GeneID:5245See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11548.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300408.8 ENSP00000300408.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300408.8Link to Ensembl Protein Viewer:ENSP00000300408.3Re-query CCDS DB by Nucleotide ID:ENST00000300408Re-query CCDS DB by Protein ID:ENSP00000300408
Original member Current member EBI ENST00000419140.7 ENSP00000393320.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419140.7Link to Ensembl Protein Viewer:ENSP00000393320.3Re-query CCDS DB by Nucleotide ID:ENST00000419140Re-query CCDS DB by Protein ID:ENSP00000393320
Original member Current member EBI ENST00000512041.7 ENSP00000422182.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512041.7Link to Ensembl Protein Viewer:ENSP00000422182.3Re-query CCDS DB by Nucleotide ID:ENST00000512041Re-query CCDS DB by Protein ID:ENSP00000422182
Original member Current member EBI ENST00000511832.6 ENSP00000425035.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511832.6Link to Ensembl Protein Viewer:ENSP00000425035.2Re-query CCDS DB by Nucleotide ID:ENST00000511832Re-query CCDS DB by Protein ID:ENSP00000425035
Original member Current member EBI ENST00000504124.6 ENSP00000426433.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504124.6Link to Ensembl Protein Viewer:ENSP00000426433.3Re-query CCDS DB by Nucleotide ID:ENST00000504124Re-query CCDS DB by Protein ID:ENSP00000426433
Original member Current member EBI ENST00000614445.5 ENSP00000479488.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614445.5Link to Ensembl Protein Viewer:ENSP00000479488.1Re-query CCDS DB by Nucleotide ID:ENST00000614445Re-query CCDS DB by Protein ID:ENSP00000479488
Original member Current member EBI ENST00000617874.5 ENSP00000484113.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617874.5Link to Ensembl Protein Viewer:ENSP00000484113.1Re-query CCDS DB by Nucleotide ID:ENST00000617874Re-query CCDS DB by Protein ID:ENSP00000484113
Original member Current member NCBI NM_001281496.2 NP_001268425.1 Accepted alive Link to Nucleotide Sequence:NM_001281496.2Link to Protein Sequence:NP_001268425.1Re-query CCDS DB by Nucleotide ID:NM_001281496Re-query CCDS DB by Protein ID:NP_001268425Link to BLAST:NP_001268425.1
Original member Current member NCBI NM_001281715.2 NP_001268644.1 Accepted alive Link to Nucleotide Sequence:NM_001281715.2Link to Protein Sequence:NP_001268644.1Re-query CCDS DB by Nucleotide ID:NM_001281715Re-query CCDS DB by Protein ID:NP_001268644Link to BLAST:NP_001268644.1
Original member Current member NCBI NM_002634.4 NP_002625.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002634.4Link to Protein Sequence:NP_002625.1Re-query CCDS DB by Nucleotide ID:NM_002634Re-query CCDS DB by Protein ID:NP_002625Link to BLAST:NP_002625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268425.1 272 P35232-1 272 100% 0 0
NP_001268644.1 272 P35232-1 272 100% 0 0
NP_002625.1 272 P35232-1 272 100% 0 0

Chromosomal Locations for CCDS 11548.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49404992 49405204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49406759 49406854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49409042 49409158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49409331 49409473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49411678 49411839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49413177 49413264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGGCTGCCAAAGTGTTTGAGTCCATTGGCAAGTTTGGCCTGGCCTTAGCTGTTGCAGGAGGCGTGGTGA
ACTCTGCCTTATATAATGTGGATGCTGGGCACAGAGCTGTCATCTTTGACCGATTCCGTGGAGTGCAGGA
CATTGTGGTAGGGGAAGGGACTCATTTTCTCATCCCGTGGGTACAGAAACCAATTATCTTTGACTGCCGT
TCTCGACCACGTAATGTGCCAGTCATCACTGGTAGCAAAGATTTACAGAATGTCAACATCACACTGCGCA
TCCTCTTCCGGCCTGTCGCCAGCCAGCTTCCTCGCATCTTCACCAGCATCGGAGAGGACTATGATGAGCG
TGTGCTGCCGTCCATCACAACTGAGATCCTCAAGTCAGTGGTGGCTCGCTTTGATGCTGGAGAACTAATC
ACCCAGAGAGAGCTGGTCTCCAGGCAGGTGAGCGACGACCTTACAGAGCGAGCCGCCACCTTTGGGCTCA
TCCTGGATGACGTGTCCTTGACACATCTGACCTTCGGGAAGGAGTTCACAGAAGCGGTGGAAGCCAAACA
GGTGGCTCAGCAGGAAGCAGAGAGGGCCAGATTTGTGGTGGAAAAGGCTGAGCAACAGAAAAAGGCGGCC
ATCATCTCTGCTGAGGGCGACTCCAAGGCAGCTGAGCTGATTGCCAACTCACTGGCCACTGCAGGGGATG
GCCTGATCGAGCTGCGCAAGCTGGAAGCTGCAGAGGACATCGCGTACCAGCTCTCACGCTCTCGGAACAT
CACCTACCTGCCAGCGGGGCAGTCCGTGCTCCTCCAGCTGCCCCAGTGA

Translation (272 aa):
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR
SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI
TQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAA
IISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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