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Report for CCDS11396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11396.1 Public Homo sapiens 17 KRT13 24 110 108 CCDS HistoryNCBI Gene:3860Re-query CCDS DB by CCDS ID:11396.1Re-query CCDS DB by GeneID:3860See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246635.8 ENSP00000246635.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246635.8Link to Ensembl Protein Viewer:ENSP00000246635.3Re-query CCDS DB by Nucleotide ID:ENST00000246635Re-query CCDS DB by Protein ID:ENSP00000246635
Original member Current member NCBI NM_153490.3 NP_705694.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153490.3Link to Protein Sequence:NP_705694.3Re-query CCDS DB by Nucleotide ID:NM_153490Re-query CCDS DB by Protein ID:NP_705694Link to BLAST:NP_705694.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705694.3 458 P13646-1 458 100% 0 0

Chromosomal Locations for CCDS 11396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41501256 41501362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41501719 41501744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41502374 41502594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41502687 41502812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41502937 41503098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41503287 41503443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41503643 41503725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41505056 41505550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGAGCCTCCGCCTGCAGAGCTCCTCTGCCAGCTATGGAGGTGGTTTCGGGGGTGGCTCTTGCCAGCTGG
GAGGAGGCCGTGGTGTCTCTACCTGTTCAACTCGGTTTGTGTCCGGGGGATCAGCTGGGGGCTATGGAGG
CGGCGTGAGCTGTGGTTTTGGTGGAGGGGCTGGTAGTGGCTTTGGAGGTGGCTATGGAGGTGGCCTTGGA
GGTGGCTATGGAGGTGGCCTTGGAGGTGGCTTTGGTGGGGGTTTTGCTGGTGGCTTTGTTGACTTTGGTG
CTTGTGATGGCGGCCTCCTCACTGGCAATGAGAAGATCACCATGCAGAACCTCAACGACCGCCTGGCTTC
CTACCTGGAGAAGGTGCGCGCCCTGGAGGAGGCCAACGCTGACCTGGAGGTGAAGATCCGTGACTGGCAC
CTGAAGCAGAGCCCAGCTAGCCCTGAGCGGGACTACAGCCCCTACTACAAGACCATTGAAGAGCTCCGGG
ACAAGATCCTGACCGCCACCATTGAAAACAACCGGGTCATCCTGGAGATTGACAATGCCAGGCTGGCTGC
GGACGACTTCAGGCTCAAGTATGAGAATGAGCTGGCCCTGCGCCAGAGCGTGGAGGCCGACATCAACGGC
CTGCGCCGGGTGCTGGATGAGCTCACTCTGTCTAAGACTGACCTGGAGATGCAGATCGAGAGCCTGAATG
AAGAGCTAGCCTACATGAAGAAGAACCATGAAGAGGAGATGAAGGAATTTAGCAACCAGGTGGTCGGCCA
GGTCAACGTGGAGATGGATGCCACCCCAGGCATTGACCTGACCCGCGTGCTGGCAGAGATGAGGGAGCAG
TACGAGGCCATGGCAGAGAGGAACCGCCGGGATGCTGAGGAATGGTTCCACACCAAGAGTGCAGAGCTGA
ACAAGGAGGTGTCTACCAACACTGCCATGATTCAGACCAGCAAGACAGAGATCACGGAGCTCAGGCGCAC
GCTCCAAGGCCTGGAGATTGAGCTGCAGTCCCAGCTGAGCATGAAAGCGGGGCTGGAGAACACGGTGGCA
GAGACGGAGTGCCGCTATGCCCTGCAGCTGCAGCAGATCCAGGGACTCATCAGCAGCATCGAGGCCCAGC
TGAGCGAGCTCCGCAGTGAGATGGAGTGCCAGAACCAAGAGTACAAGATGCTGCTGGACATCAAGACACG
TCTGGAGCAGGAGATCGCCACCTACCGCAGCCTGCTCGAGGGCCAGGACGCCAAGATGATTGGTTTCCCT
TCCTCAGCAGGAAGCGTCAGCCCCCGTAGCACCTCTGTTACCACGACTTCTAGTGCCTCTGTTACCACCA
CCTCTAATGCCTCTGGTCGCCGCACTTCTGATGTCCGTAGGCCTTAA

Translation (458 aa):
MSLRLQSSSASYGGGFGGGSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLG
GGYGGGLGGGFGGGFAGGFVDFGACDGGLLTGNEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWH
LKQSPASPERDYSPYYKTIEELRDKILTATIENNRVILEIDNARLAADDFRLKYENELALRQSVEADING
LRRVLDELTLSKTDLEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQ
YEAMAERNRRDAEEWFHTKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLENTVA
ETECRYALQLQQIQGLISSIEAQLSELRSEMECQNQEYKMLLDIKTRLEQEIATYRSLLEGQDAKMIGFP
SSAGSVSPRSTSVTTTSSASVTTTSNASGRRTSDVRRP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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