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Report for CCDS11182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11182.1 Public Homo sapiens 17 PLD6 24 110 108 CCDS HistoryNCBI Gene:201164Re-query CCDS DB by CCDS ID:11182.1Re-query CCDS DB by GeneID:201164See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11182.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321560.4 ENSP00000317177.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321560.4Link to Ensembl Protein Viewer:ENSP00000317177.3Re-query CCDS DB by Nucleotide ID:ENST00000321560Re-query CCDS DB by Protein ID:ENSP00000317177
Original member Current member NCBI NM_178836.4 NP_849158.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178836.4Link to Protein Sequence:NP_849158.2Re-query CCDS DB by Nucleotide ID:NM_178836Re-query CCDS DB by Protein ID:NP_849158Link to BLAST:NP_849158.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849158.2 252 Q8N2A8 252 100% 0 0

Chromosomal Locations for CCDS 11182.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17202767 17203098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17205860 17206286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGGGACGGTTGAGTTGGCAGGTGGCGGCCGCGGCGGCTGTGGGCCTGGCTCTGACTCTGGAGGCGCTGC
CTTGGGTGCTGCGCTGGCTGCGGTCCAGGCGGCGGCGGCCGCGGCGCGAGGCGCTGTTCTTCCCGTCTCA
GGTGACCTGTACCGAGGCCCTGCTGCGGGCTCCGGGCGCGGAGCTGGCCGAGCTCCCCGAGGGCTGCCCG
TGCGGCCTGCCCCACGGCGAGAGCGCGCTAAGCCGCCTGCTGCGTGCCCTGCTGGCCGCCCGCGCCAGCC
TGGATCTCTGCCTGTTCGCCTTCTCCAGCCCGCAGCTGGGCCGCGCCGTGCAGTTGCTGCACCAGCGTGG
GGTGCGAGTGCGGGTCGTCACCGACTGCGACTACATGGCCCTCAACGGCTCGCAAATCGGTCTGCTGCGC
AAGGCAGGGATCCAGGTCCGGCACGATCAAGACCCAGGCTACATGCATCACAAGTTTGCCATCGTGGACA
AGAGGGTGCTCATCACTGGCTCGCTCAACTGGACCACGCAAGCCATCCAGAACAACAGGGAGAATGTTCT
CATCACGGAGGACGACGAGTACGTGCGGCTTTTTCTGGAAGAATTTGAGCGCATCTGGGAACAGTTTAAC
CCTACAAAGTATACCTTTTTCCCACCAAAGAAAAGTCACGGAAGCTGTGCCCCACCTGTCTCCAGAGCTG
GAGGGAGATTGCTTTCATGGCACAGAACTTGCGGCACCTCCAGCGAAAGCCAAACCTAA

Translation (252 aa):
MGRLSWQVAAAAAVGLALTLEALPWVLRWLRSRRRRPRREALFFPSQVTCTEALLRAPGAELAELPEGCP
CGLPHGESALSRLLRALLAARASLDLCLFAFSSPQLGRAVQLLHQRGVRVRVVTDCDYMALNGSQIGLLR
KAGIQVRHDQDPGYMHHKFAIVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERIWEQFN
PTKYTFFPPKKSHGSCAPPVSRAGGRLLSWHRTCGTSSESQT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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