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Report for CCDS11170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11170.1 Public Homo sapiens 17 TVP23C 24 110 108 CCDS HistoryNCBI Gene:201158Re-query CCDS DB by CCDS ID:11170.1Re-query CCDS DB by GeneID:201158See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225576.7 ENSP00000225576.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000225576.7Link to Ensembl Protein Viewer:ENSP00000225576.3Re-query CCDS DB by Nucleotide ID:ENST00000225576Re-query CCDS DB by Protein ID:ENSP00000225576
Original member Current member NCBI NM_145301.3 NP_660344.2 Accepted alive Link to Nucleotide Sequence:NM_145301.3Link to Protein Sequence:NP_660344.2Re-query CCDS DB by Nucleotide ID:NM_145301Re-query CCDS DB by Protein ID:NP_660344Link to BLAST:NP_660344.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660344.2 276 Q96ET8-1 276 100% 0 0

Chromosomal Locations for CCDS 11170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15502864 15503232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15545785 15545916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15547059 15547148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15553685 15553829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15555282 15555364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15563437 15563448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGTTGCAGCAGGATAGTAATGATGACACTGAAGATGTTTCACTGTTTGATGCGGAAGAGGAGACGACTA
ATAGACCAAGAAAAGCCAAAATCAGACATCCAGTAGCATCGTTTTTCCACTTATTCTTTCGAGTCAGTGC
AATCATCGTCTGTCTTCTCTGTGAGTTGCTCAGCAGCAGCTTTATTACCTGTATGGTTACAATTATCTTG
TTGTTGTCGTGTGACTTTTGGGCAGTGAAGAATGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGA
ATCACATTGATGAAGATGGAAAGAGCCATTGGGTGTTTGAATCTAGAAAGGAGTCCTCTCAAGAGAATAA
AACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCTGTTCAGTACTGTGGGTGATA
TTTGCCTTTAGTGCACTCTTCTCCTTCACAGTAAAGTGGCTGAGACGGTCTCGCCACATTGCCCAGACTG
GTCTGAAAGTCTTGGGCTCAAGAGATCCTCCCGCTTCCGCCTTCCAAAGCGCTGGGATAACAGGCGTGAG
CCGCTGCCCGGGCCATCCCTCGAGGAAGTTTCATCAGGTAGACATTAATTCTTTCACGAGGATCACGGAT
CGAGCTCTTTACTGGAAACCTGCGCCCCGCCTTAGTTCTCCACCTCTTCGTGCGGCTCCAGGCAACTGCC
AACAGATGGCGCCCGCCCGCCTATTTCTCTCCTTGCGGCTTTGGGCCTGGAGGGGAGGTGGGGAGAGTCC
CAATAGCAGAGGAACTGGTGAGCCCGGGCCAAAATTTCATCTGGCATCCGGAATGCATTAA

Translation (276 aa):
MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSSFITCMVTIIL
LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWVI
FAFSALFSFTVKWLRRSRHIAQTGLKVLGSRDPPASAFQSAGITGVSRCPGHPSRKFHQVDINSFTRITD
RALYWKPAPRLSSPPLRAAPGNCQQMAPARLFLSLRLWAWRGGGESPNSRGTGEPGPKFHLASGMH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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