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Report for CCDS11085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11085.1 Public Homo sapiens 17 SLC16A13 24 110 108 CCDS HistoryNCBI Gene:201232Re-query CCDS DB by CCDS ID:11085.1Re-query CCDS DB by GeneID:201232See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308027.7 ENSP00000309751.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308027.7Link to Ensembl Protein Viewer:ENSP00000309751.6Re-query CCDS DB by Nucleotide ID:ENST00000308027Re-query CCDS DB by Protein ID:ENSP00000309751
Original member Current member NCBI NM_201566.3 NP_963860.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_201566.3Link to Protein Sequence:NP_963860.1Re-query CCDS DB by Nucleotide ID:NM_201566Re-query CCDS DB by Protein ID:NP_963860Link to BLAST:NP_963860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_963860.1 426 Q7RTY0 426 100% 0 0

Chromosomal Locations for CCDS 11085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7036383 7036581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7036727 7036870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7038152 7038889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7039763 7039962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGCGCGCAGGACAGAGCCCCCCGACGGGGGCTGGGGATGGGTGGTGGTGCTCTCAGCGTTCTTCCAGT
CGGCGCTTGTGTTTGGGGTGCTCCGCTCCTTTGGGGTCTTCTTCGTGGAGTTTGTGGCGGCGTTTGAGGA
GCAGGCAGCGCGCGTCTCCTGGATCGCCTCCATAGGAATCGCGGTGCAGCAGTTTGGGAGCCCGGTAGGC
AGTGCCCTGAGCACGAAGTTCGGGCCCAGGCCCGTGGTGATGACTGGAGGCATCTTGGCTGCGCTGGGGA
TGCTGCTCGCCTCTTTTGCTACTTCCTTGACCCACCTATACCTGAGTATTGGGTTGCTGTCAGGCTCTGG
CTGGGCTTTGACCTTCGCTCCGACCCTGGCCTGCCTGTCCTGTTATTTCTCTCGCCGACGATCCCTGGCC
ACCGGGCTGGCACTGACAGGCGTGGGCCTCTCCTCCTTCACATTTGCCCCCTTTTTCCAGTGGCTGCTCA
GCCACTACGCCTGGAGGGGGTCCCTGCTGCTGGTGTCTGCCCTCTCCCTCCACCTAGTGGCCTGTGGTGC
TCTCCTCCGCCCACCCTCCCTGGCTGAGGACCCTGCTGTGGGTGGTCCCAGGGCCCAACTCACCTCTCTC
CTCCATCATGGCCCCTTCCTCCGTTACACTGTTGCCCTCACCCTGATCAACACTGGCTACTTCATTCCCT
ACCTCCACCTGGTGGCCCATCTCCAGGACCTGGATTGGGACCCACTACCTGCTGCCTTCCTACTCTCAGT
TGTTGCTATTTCTGACCTCGTGGGGCGTGTGGTCTCCGGATGGCTGGGAGATGCAGTCCCAGGGCCTGTG
ACACGACTCCTGATGCTCTGGACCACCTTGACTGGGGTGTCACTAGCCCTGTTCCCTGTAGCTCAGGCTC
CCACAGCCCTGGTGGCTCTGGCTGTGGCCTACGGCTTCACATCAGGGGCTCTGGCCCCACTGGCCTTCTC
CGTGCTGCCTGAACTAATAGGGACTAGAAGGATTTACTGTGGCCTGGGACTGTTGCAGATGATAGAGAGC
ATCGGGGGGCTGCTGGGGCCTCCTCTCTCAGGCTACCTCCGGGATGTGACAGGCAACTACACGGCTTCTT
TTGTGGTGGCTGGGGCCTTCCTTCTTTCAGGGAGTGGCATTCTCCTCACCCTGCCCCACTTCTTCTGCTT
CTCAACTACTACCTCCGGGCCCCAGGACCTTGTAACAGAAGCACTAGATACTAAAGTTCCCCTACCCAAG
GAGGGGCTGGAAGAGGACTGA

Translation (426 aa):
MARRTEPPDGGWGWVVVLSAFFQSALVFGVLRSFGVFFVEFVAAFEEQAARVSWIASIGIAVQQFGSPVG
SALSTKFGPRPVVMTGGILAALGMLLASFATSLTHLYLSIGLLSGSGWALTFAPTLACLSCYFSRRRSLA
TGLALTGVGLSSFTFAPFFQWLLSHYAWRGSLLLVSALSLHLVACGALLRPPSLAEDPAVGGPRAQLTSL
LHHGPFLRYTVALTLINTGYFIPYLHLVAHLQDLDWDPLPAAFLLSVVAISDLVGRVVSGWLGDAVPGPV
TRLLMLWTTLTGVSLALFPVAQAPTALVALAVAYGFTSGALAPLAFSVLPELIGTRRIYCGLGLLQMIES
IGGLLGPPLSGYLRDVTGNYTASFVVAGAFLLSGSGILLTLPHFFCFSTTTSGPQDLVTEALDTKVPLPK
EGLEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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