NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10665.1 Public Homo sapiens 16 INO80E 24 110 108 CCDS HistoryNCBI Gene:283899Re-query CCDS DB by CCDS ID:10665.1Re-query CCDS DB by GeneID:283899See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10665.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000563197.6 ENSP00000457016.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000563197.6Link to Ensembl Protein Viewer:ENSP00000457016.1Re-query CCDS DB by Nucleotide ID:ENST00000563197Re-query CCDS DB by Protein ID:ENSP00000457016
Original member Current member NCBI NM_173618.3 NP_775889.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173618.3Link to Protein Sequence:NP_775889.1Re-query CCDS DB by Nucleotide ID:NM_173618Re-query CCDS DB by Protein ID:NP_775889Link to BLAST:NP_775889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775889.1 244 Q8NBZ0-1 244 100% 0 0

Chromosomal Locations for CCDS 10665.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29996311 29996391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29996547 29996617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29996808 29996860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30000758 30000836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30000929 30001040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30001414 30001530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30005221 30005442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGAACGGGCCGGCGGACGGCGAAGTGGACTACAAAAAAAAATACCGGAATCTGAAGCGGAAGCTCAAGT
TCCTCATCTACGAGCACGAGTGCTTCCAGGAGGAGCTGAGGAAAGCGCAAAGGAAATTACTGAAGGTGTC
CCGGGACAAGAGTTTCCTCCTAGACCGACTTCTGCAGTACGAGAACGTGGATGAAGACTCTTCGGACTCA
GATGCCACTGCATCATCAGATAACAGCGAGACGGAGGGGACACCCAAGTTGTCTGACACACCGGCCCCTA
AGAGGAAGAGAAGCCCTCCGCTGGGGGGCGCCCCCTCTCCCTCCAGCCTCTCCCTGCCTCCTTCAACAGG
GTTTCCCCTTCAGGCCTCCGGGGTCCCCTCCCCATACCTGAGCTCGCTGGCCTCCTCCCGCTACCCCCCA
TTCCCTTCTGACTACCTGGCCCTGCAGCTGCCCGAGCCCAGTCCCCTGAGGCCCAAGCGGGAGAAACGGC
CCCGCCTGCCCCGGAAACTCAAGATGGCGGTGGGACCCCCCGACTGCCCTGTGGGAGGGCCGCTGACCTT
CCCTGGCCGGGGTTCTGGGGCTGGGGTCGGGACAACCCTGACCCCCCTCCCACCCCCTAAGATGCCCCCC
CCCACGATCCTGAGCACGGTCCCTCGGCAGATGTTCAGCGATGCAGGTAGCGGGGACGATGCCTTGGATG
GAGACGATGACCTGGTGATCGACATCCCGGAGTGA

Translation (244 aa):
MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDS
DATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASSRYPP
FPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTTLTPLPPPKMPP
PTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH