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Report for CCDS10567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10567.1 Public Homo sapiens 16 CEP20 24 110 108 CCDS HistoryNCBI Gene:123811Re-query CCDS DB by CCDS ID:10567.1Re-query CCDS DB by GeneID:123811See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255759.11 ENSP00000255759.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255759.11Link to Ensembl Protein Viewer:ENSP00000255759.6Re-query CCDS DB by Nucleotide ID:ENST00000255759Re-query CCDS DB by Protein ID:ENSP00000255759
Original member Current member NCBI NM_144600.4 NP_653201.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144600.4Link to Protein Sequence:NP_653201.1Re-query CCDS DB by Nucleotide ID:NM_144600Re-query CCDS DB by Protein ID:NP_653201Link to BLAST:NP_653201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653201.1 174 Q96NB1-1 174 100% 0 0

Chromosomal Locations for CCDS 10567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 15867440 15867516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15873491 15873627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15879804 15879888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15884008 15884205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15888558 15888585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGCGACTGTGGCAGAGTTGAAGGCTGTTTTAAAGGACACCTTGGAAAAAAAGGGGGTATTAGGGCATT
TAAAAGCAAGGATCCGAGCTGAAGTTTTCAATGCCCTAGATGATGACCGTGAACCCCGACCATCATTGTC
TCATGAAAACCTTCTAATTAATGAATTAATTCGAGAGTATTTAGAATTCAACAAATATAAGTATACAGCA
TCTGTCCTCATAGCAGAATCTGGTCAACCTGTAGTTCCGTTGGACAGACAGTTTCTCATCCATGAACTAA
ATGCATTTGAAGAATCAAAGGATAATACAATACCTCTTTTATATGGGATTTTAGCCCATTTCTTGCGTGG
AACTAAGGATGGCATCCAGAATGCATTTCTGAAAGGGCCTTCACTTCAGCCTTCAGACCCAAGTCTTGGC
AGACAACCTAGTAGAAGAAAGCCAATGGATGACCACCTAAGAAAGGAGGAACAGAAAAGTACTAACATTG
AAGATCTTCATGTTTCTCAGGCAGTCAACAGATAA

Translation (174 aa):
MATVAELKAVLKDTLEKKGVLGHLKARIRAEVFNALDDDREPRPSLSHENLLINELIREYLEFNKYKYTA
SVLIAESGQPVVPLDRQFLIHELNAFEESKDNTIPLLYGILAHFLRGTKDGIQNAFLKGPSLQPSDPSLG
RQPSRRKPMDDHLRKEEQKSTNIEDLHVSQAVNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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