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Report for CCDS1056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1056.1 Public Homo sapiens 1 CREB3L4 24 110 108 CCDS HistoryNCBI Gene:148327Re-query CCDS DB by CCDS ID:1056.1Re-query CCDS DB by GeneID:148327See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1056.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000271889.8 ENSP00000271889.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000271889.8Link to Ensembl Protein Viewer:ENSP00000271889.4Re-query CCDS DB by Nucleotide ID:ENST00000271889Re-query CCDS DB by Protein ID:ENSP00000271889
Original member Current member EBI ENST00000368603.5 ENSP00000357592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368603.5Link to Ensembl Protein Viewer:ENSP00000357592.1Re-query CCDS DB by Nucleotide ID:ENST00000368603Re-query CCDS DB by Protein ID:ENSP00000357592
Original member Current member EBI ENST00000368607.8 ENSP00000357596.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368607.8Link to Ensembl Protein Viewer:ENSP00000357596.3Re-query CCDS DB by Nucleotide ID:ENST00000368607Re-query CCDS DB by Protein ID:ENSP00000357596
Original member Current member NCBI NM_001255978.2 NP_001242907.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001255978.2Link to Protein Sequence:NP_001242907.1Re-query CCDS DB by Nucleotide ID:NM_001255978Re-query CCDS DB by Protein ID:NP_001242907Link to BLAST:NP_001242907.1
Original member Current member NCBI NM_001255979.2 NP_001242908.1 Accepted alive Link to Nucleotide Sequence:NM_001255979.2Link to Protein Sequence:NP_001242908.1Re-query CCDS DB by Nucleotide ID:NM_001255979Re-query CCDS DB by Protein ID:NP_001242908Link to BLAST:NP_001242908.1
Original member Current member NCBI NM_130898.4 NP_570968.1 Accepted alive Link to Nucleotide Sequence:NM_130898.4Link to Protein Sequence:NP_570968.1Re-query CCDS DB by Nucleotide ID:NM_130898Re-query CCDS DB by Protein ID:NP_570968Link to BLAST:NP_570968.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001242907.1 395 Q8TEY5-1 395 100% 0 0
NP_001242908.1 395 Q8TEY5-1 395 100% 0 0
NP_570968.1 395 Q8TEY5-1 395 100% 0 0

Chromosomal Locations for CCDS 1056.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153968526 153968699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153968930 153969176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153969334 153969455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153972744 153972836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153972972 153973078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153973195 153973263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153973380 153973464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153973620 153973716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153973872 153974065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGATCTCGGAATCCCTGACCTGCTGGACGCGTGGCTGGAGCCCCCAGAGGATATCTTCTCGACAGGAT
CCGTCCTGGAGCTGGGACTCCACTGCCCCCCTCCAGAGGTTCCGGTAACTAGGCTACAGGAACAGGGACT
GCAAGGCTGGAAGTCCGGTGGGGACCGTGGCTGTGGCCTTCAAGAGAGTGAGCCTGAAGATTTCTTGAAG
CTTTTCATTGATCCCAATGAGGTGTACTGCTCAGAAGCATCTCCTGGCAGTGACAGTGGCATCTCTGAGG
ACCCCTGCCATCCAGACAGTCCCCCTGCCCCCAGGGCAACCAGTTCTCCTATGCTCTATGAGGTTGTCTA
TGAGGCAGGGGCCCTGGAGAGGATGCAGGGGGAAACTGGGCCAAATGTAGGCCTTATCTCCATCCAGCTA
GATCAGTGGAGCCCAGCATTTATGGTGCCTGATTCCTGCATGGTCAGTGAGCTGCCCTTTGATGCTCATG
CCCACATCCTGCCCAGAGCAGGCACCGTAGCCCCAGTGCCCTGTACAACCCTGCTGCCCTGTCAAACCCT
GTTCCTGACCGATGAGGAGAAGCGTCTGCTGGGGCAGGAAGGGGTTTCCCTGCCCTCTCACCTGCCCCTC
ACCAAGGCAGAGGAGAGGGTCCTCAAGAAGGTCAGGAGGAAAATCCGTAACAAGCAGTCAGCTCAGGACA
GTCGGCGGCGGAAGAAGGAGTACATTGATGGGCTGGAGAGCAGGGTGGCAGCCTGTTCTGCACAGAACCA
AGAATTACAGAAAAAAGTCCAGGAGCTGGAGAGGCACAACATCTCCTTGGTAGCTCAGCTCCGCCAGCTG
CAGACGCTAATTGCTCAAACTTCCAACAAAGCTGCCCAGACCAGCACTTGTGTTTTGATTCTTCTTTTTT
CCCTGGCTCTCATCATCCTGCCCAGCTTCAGTCCATTCCAGAGTCGACCAGAAGCTGGGTCTGAGGATTA
CCAGCCTCACGGAGTGACTTCCAGAAATATCCTGACCCACAAGGACGTAACAGAAAATCTGGAGACCCAA
GTGGTAGAGTCCAGACTGAGGGAGCCACCTGGAGCCAAGGATGCAAATGGCTCAACAAGGACACTGCTTG
AGAAGATGGGAGGGAAGCCAAGACCCAGTGGGCGCATCCGGTCCGTGCTGCATGCAGATGAGATGTGA

Translation (395 aa):
MDLGIPDLLDAWLEPPEDIFSTGSVLELGLHCPPPEVPVTRLQEQGLQGWKSGGDRGCGLQESEPEDFLK
LFIDPNEVYCSEASPGSDSGISEDPCHPDSPPAPRATSSPMLYEVVYEAGALERMQGETGPNVGLISIQL
DQWSPAFMVPDSCMVSELPFDAHAHILPRAGTVAPVPCTTLLPCQTLFLTDEEKRLLGQEGVSLPSHLPL
TKAEERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNISLVAQLRQL
QTLIAQTSNKAAQTSTCVLILLFSLALIILPSFSPFQSRPEAGSEDYQPHGVTSRNILTHKDVTENLETQ
VVESRLREPPGAKDANGSTRTLLEKMGGKPRPSGRIRSVLHADEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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