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Report for CCDS10512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10512.1 Public Homo sapiens 16 PAM16 24 110 108 CCDS HistoryNCBI Gene:51025Re-query CCDS DB by CCDS ID:10512.1Re-query CCDS DB by GeneID:51025See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10512.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318059.8 ENSP00000315693.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318059.8Link to Ensembl Protein Viewer:ENSP00000315693.3Re-query CCDS DB by Nucleotide ID:ENST00000318059Re-query CCDS DB by Protein ID:ENSP00000315693
Original member Current member EBI ENST00000576217.1 ENSP00000461047.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000576217.1Link to Ensembl Protein Viewer:ENSP00000461047.1Re-query CCDS DB by Nucleotide ID:ENST00000576217Re-query CCDS DB by Protein ID:ENSP00000461047
Original member Current member NCBI NM_016069.11 NP_057153.8 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016069.11Link to Protein Sequence:NP_057153.8Re-query CCDS DB by Nucleotide ID:NM_016069Re-query CCDS DB by Protein ID:NP_057153Link to BLAST:NP_057153.8

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057153.8 125 Q9Y3D7 125 100% 0 0

Chromosomal Locations for CCDS 10512.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4340319 4340405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4340920 4340985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4341368 4341504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4343207 4343291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4351232 4351234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGGCCAAGTACCTGGCCCAGATCATTGTGATGGGCGTGCAGGTGGTGGGCAGGGCCTTTGCACGGGCCT
TGCGGCAGGAGTTTGCAGCCAGCCGGGCCGCAGCTGATGCCCGAGGACGCGCTGGACACCGGTCTGCAGC
CGCTTCCAACCTCTCCGGCCTCAGCCTCCAGGAGGCACAGCAGATTCTCAACGTGTCCAAGCTGAGCCCT
GAGGAGGTCCAGAAGAACTATGAACACTTATTTAAGGTGAATGATAAATCCGTGGGTGGCTCCTTCTACC
TGCAGTCAAAGGTGGTCCGCGCAAAGGAGCGCCTGGATGAGGAACTCAAAATCCAGGCCCAGGAGGACAG
AGAAAAAGGGCAGATGCCCCATACGTGA

Translation (125 aa):
MAKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQILNVSKLSP
EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELKIQAQEDREKGQMPHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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