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Report for CCDS10052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10052.1 Public Homo sapiens 15 BMF 24 110 108 CCDS HistoryNCBI Gene:90427Re-query CCDS DB by CCDS ID:10052.1Re-query CCDS DB by GeneID:90427See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354670.9 ENSP00000346697.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354670.9Link to Ensembl Protein Viewer:ENSP00000346697.4Re-query CCDS DB by Nucleotide ID:ENST00000354670Re-query CCDS DB by Protein ID:ENSP00000346697
Original member Current member EBI ENST00000397573.5 ENSP00000380703.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397573.5Link to Ensembl Protein Viewer:ENSP00000380703.1Re-query CCDS DB by Nucleotide ID:ENST00000397573Re-query CCDS DB by Protein ID:ENSP00000380703
Original member Current member EBI ENST00000561282.5 ENSP00000453522.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561282.5Link to Ensembl Protein Viewer:ENSP00000453522.1Re-query CCDS DB by Nucleotide ID:ENST00000561282Re-query CCDS DB by Protein ID:ENSP00000453522
Original member Current member EBI ENST00000561360.5 ENSP00000453892.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561360.5Link to Ensembl Protein Viewer:ENSP00000453892.1Re-query CCDS DB by Nucleotide ID:ENST00000561360Re-query CCDS DB by Protein ID:ENSP00000453892
Original member Current member NCBI NM_001003940.2 NP_001003940.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001003940.2Link to Protein Sequence:NP_001003940.1Re-query CCDS DB by Nucleotide ID:NM_001003940Re-query CCDS DB by Protein ID:NP_001003940Link to BLAST:NP_001003940.1
Original member Current member NCBI NM_001398495.1 NP_001385424.1 Accepted alive Link to Nucleotide Sequence:NM_001398495.1Link to Protein Sequence:NP_001385424.1Re-query CCDS DB by Nucleotide ID:NM_001398495Re-query CCDS DB by Protein ID:NP_001385424Link to BLAST:NP_001385424.1
Original member Current member NCBI NM_001398496.1 NP_001385425.1 Accepted alive Link to Nucleotide Sequence:NM_001398496.1Link to Protein Sequence:NP_001385425.1Re-query CCDS DB by Nucleotide ID:NM_001398496Re-query CCDS DB by Protein ID:NP_001385425Link to BLAST:NP_001385425.1
Original member Current member NCBI NM_001398497.1 NP_001385426.1 Accepted alive Link to Nucleotide Sequence:NM_001398497.1Link to Protein Sequence:NP_001385426.1Re-query CCDS DB by Nucleotide ID:NM_001398497Re-query CCDS DB by Protein ID:NP_001385426Link to BLAST:NP_001385426.1
Original member Current member NCBI NM_001398498.1 NP_001385427.1 Accepted alive Link to Nucleotide Sequence:NM_001398498.1Link to Protein Sequence:NP_001385427.1Re-query CCDS DB by Nucleotide ID:NM_001398498Re-query CCDS DB by Protein ID:NP_001385427Link to BLAST:NP_001385427.1
Original member Current member NCBI NM_001398499.1 NP_001385428.1 Accepted alive Link to Nucleotide Sequence:NM_001398499.1Link to Protein Sequence:NP_001385428.1Re-query CCDS DB by Nucleotide ID:NM_001398499Re-query CCDS DB by Protein ID:NP_001385428Link to BLAST:NP_001385428.1
Original member Current member NCBI NM_001398500.1 NP_001385429.1 Accepted alive Link to Nucleotide Sequence:NM_001398500.1Link to Protein Sequence:NP_001385429.1Re-query CCDS DB by Nucleotide ID:NM_001398500Re-query CCDS DB by Protein ID:NP_001385429Link to BLAST:NP_001385429.1
Original member Current member NCBI NM_001398501.1 NP_001385430.1 Accepted alive Link to Nucleotide Sequence:NM_001398501.1Link to Protein Sequence:NP_001385430.1Re-query CCDS DB by Nucleotide ID:NM_001398501Re-query CCDS DB by Protein ID:NP_001385430Link to BLAST:NP_001385430.1
Original member Current member NCBI NM_001398502.1 NP_001385431.1 Accepted alive Link to Nucleotide Sequence:NM_001398502.1Link to Protein Sequence:NP_001385431.1Re-query CCDS DB by Nucleotide ID:NM_001398502Re-query CCDS DB by Protein ID:NP_001385431Link to BLAST:NP_001385431.1
Original member Current member NCBI NM_001398503.1 NP_001385432.1 Accepted alive Link to Nucleotide Sequence:NM_001398503.1Link to Protein Sequence:NP_001385432.1Re-query CCDS DB by Nucleotide ID:NM_001398503Re-query CCDS DB by Protein ID:NP_001385432Link to BLAST:NP_001385432.1
Original member Current member NCBI NM_001398504.1 NP_001385433.1 Accepted alive Link to Nucleotide Sequence:NM_001398504.1Link to Protein Sequence:NP_001385433.1Re-query CCDS DB by Nucleotide ID:NM_001398504Re-query CCDS DB by Protein ID:NP_001385433Link to BLAST:NP_001385433.1
Original member Current member NCBI NM_001398505.1 NP_001385434.1 Accepted alive Link to Nucleotide Sequence:NM_001398505.1Link to Protein Sequence:NP_001385434.1Re-query CCDS DB by Nucleotide ID:NM_001398505Re-query CCDS DB by Protein ID:NP_001385434Link to BLAST:NP_001385434.1
Original member Current member NCBI NM_001398506.1 NP_001385435.1 Accepted alive Link to Nucleotide Sequence:NM_001398506.1Link to Protein Sequence:NP_001385435.1Re-query CCDS DB by Nucleotide ID:NM_001398506Re-query CCDS DB by Protein ID:NP_001385435Link to BLAST:NP_001385435.1
Original member Current member NCBI NM_001398507.1 NP_001385436.1 Accepted alive Link to Nucleotide Sequence:NM_001398507.1Link to Protein Sequence:NP_001385436.1Re-query CCDS DB by Nucleotide ID:NM_001398507Re-query CCDS DB by Protein ID:NP_001385436Link to BLAST:NP_001385436.1
Original member Current member NCBI NM_033503.4 NP_277038.1 Accepted alive Link to Nucleotide Sequence:NM_033503.4Link to Protein Sequence:NP_277038.1Re-query CCDS DB by Nucleotide ID:NM_033503Re-query CCDS DB by Protein ID:NP_277038Link to BLAST:NP_277038.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003940.1 184 Q96LC9-1 184 100% 0 0
NP_001385424.1 184 Q96LC9-1 184 100% 0 0
NP_001385425.1 184 Q96LC9-1 184 100% 0 0
NP_001385426.1 184 Q96LC9-1 184 100% 0 0
NP_001385427.1 184 Q96LC9-1 184 100% 0 0
NP_001385428.1 184 Q96LC9-1 184 100% 0 0
NP_001385429.1 184 Q96LC9-1 184 100% 0 0
NP_001385430.1 184 Q96LC9-1 184 100% 0 0
NP_001385431.1 184 Q96LC9-1 184 100% 0 0
NP_001385432.1 184 Q96LC9-1 184 100% 0 0
NP_001385433.1 184 Q96LC9-1 184 100% 0 0
NP_001385434.1 184 Q96LC9-1 184 100% 0 0
NP_001385435.1 184 Q96LC9-1 184 100% 0 0
NP_001385436.1 184 Q96LC9-1 184 100% 0 0
NP_277038.1 184 Q96LC9-1 184 100% 0 0

Chromosomal Locations for CCDS 10052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 40091787 40091888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40104180 40104340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40105795 40106086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGAGCCATCTCAGTGTGTGGAGGAGCTGGAGGATGATGTGTTCCAACCAGAGGATGGGGAGCCGGTGA
CCCAACCCGGGAGCTTGCTCTCTGCTGACCTGTTTGCCCAGAGCCTACTGGACTGCCCCCTCAGCCGACT
TCAGCTCTTCCCTCTCACCCACTGCTGTGGCCCTGGCCTTCGACCCACCAGCCAGGAAGACAAAGCTACC
CAGACTCTCAGCCCAGCCTCCCCCAGCCAAGGTGTCATGCTGCCTTGTGGGGTGACTGAGGAACCCCAGC
GACTCTTTTATGGCAATGCTGGCTATCGGCTTCCTCTCCCTGCCAGTTTCCCAGCAGTCTTGCCCATTGG
GGAGCAGCCCCCCGAAGGGCAGTGGCAACATCAAGCAGAGGTACAGATTGCCCGAAAGCTTCAGTGCATT
GCAGACCAGTTCCACCGGCTTCATGTGCAGCAACACCAGCAGAACCAAAATCGTGTGTGGTGGCAGATCC
TCCTCTTCCTGCACAACCTTGCTTTGAATGGAGAAGAGAACAGGAACGGGGCAGGCCCTAGGTGA

Translation (184 aa):
MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKAT
QTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQPPEGQWQHQAEVQIARKLQCI
ADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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