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Report for CCDS7997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7997.1 Public Homo sapiens 11 TMEM132A 24 110 108 CCDS HistoryNCBI Gene:54972Re-query CCDS DB by CCDS ID:7997.1Re-query CCDS DB by GeneID:54972See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7997.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000005286.8 ENSP00000005286.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000005286.8Link to Ensembl Protein Viewer:ENSP00000005286.4Re-query CCDS DB by Nucleotide ID:ENST00000005286Re-query CCDS DB by Protein ID:ENSP00000005286
Original member Current member NCBI NM_017870.4 NP_060340.2 Accepted alive Link to Nucleotide Sequence:NM_017870.4Link to Protein Sequence:NP_060340.2Re-query CCDS DB by Nucleotide ID:NM_017870Re-query CCDS DB by Protein ID:NP_060340Link to BLAST:NP_060340.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060340.2 1024 Q24JP5-2 1024 100% 0 0

Chromosomal Locations for CCDS 7997.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60924634 60924733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60927204 60927418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60927641 60927859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60928629 60928960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60930510 60930659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60931686 60931884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60931984 60932127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60933542 60933744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60934488 60934764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60935252 60935443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60935864 60936907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3075 nt):
ATGTGCGCGCGGATGGCCGGTCGCACAACAGCGGCCCCTCGGGGGCCCTACGGCCCCTGGCTCTGCCTCC
TGGTGGCCCTCGCCCTGGACGTCGTGAGAGTGGACTGTGGCCAGGCTCCCCTGGACCCTGTCTACCTGCC
GGCAGCCCTGGAGCTCCTAGACGCCCCTGAACACTTCCGTGTGCAGCAGGTGGGCCACTACCCACCTGCC
AACTCCTCTCTGAGCTCCCGATCTGAGACCTTTCTGCTCCTACAGCCCTGGCCCAGGGCCCAGCCACTTC
TCCGGGCCTCCTACCCACCTTTTGCCACTCAGCAGGTGGTCCCCCCTCGAGTCACTGAGCCCCACCAACG
GCCAGTCCCATGGGACGTGCGGGCCGTTTCAGTGGAAGCGGCTGTGACTCCAGCAGAGCCCTACGCCCGG
GTTCTCTTCCACCTCAAAGGGCAGGATTGGCCACCAGGGTCTGGCAGCCTGCCCTGTGCCCGGCTCCATG
CCACACACCCTGCCGGCACTGCTCACCAAGCCTGCCGCTTCCAGCCATCCCTGGGCGCCTGCGTGGTGGA
GCTGGAGCTTCCCTCGCACTGGTTCTCACAGGCCTCCACCACACGGGCCGAGCTGGCCTACACGCTTGAG
CCTGCAGCTGAGGGCCCTGGGGGCTGTGGCTCCGGCGAGGAGAACGACCCTGGGGAGCAGGCCCTCCCAG
TGGGGGGTGTGGAGCTGCGCCCAGCAGACCCCCCGCAGTACCAGGAGGTACCTCTGGACGAGGCTGTGAC
TCTGCGGGTGCCTGACATGCCAGTGCGGCCCGGCCAGCTCTTTAGTGCTACCCTCCTGCTTCGGCACAAC
TTCACAGCCAGCCTCCTGACCCTGCGGATCAAGGTGAAGAAGGGGCTGCATGTGACAGCCGCCCGCCCAG
CCCAGCCCACACTCTGGACTGCCAAGCTGGACCGCTTCAAGGGCTCCAGGCACCACACCACCCTCATCAC
CTGCCACCGTGCTGGGCTCACAGAGCCAGATTCCAGCAGTCCCCTTGAACTGTCTGAGTTCCTATGGGTG
GACTTTGTGGTGGAGAATAGCACTGGTGGGGGCGTAGCGGTCACTCGCCCCGTCACGTGGCAGCTGGAGT
ACCCAGGCCAGGCCCCTGAAGCAGAGAAGGACAAAATGGTGTGGGAAATCCTGGTGTCTGAGCGGGACAT
CAGAGCCCTTATCCCACTGGCCAAGGCTGAGGAGCTGGTGAATACAGCACCACTGACTGGAGTGCCCCAG
CATGTCCCCGTGCGCCTTGTCACTGTGGACGGCGGGGGGGCCTTGGTGGAGGTGACAGAGCATGTCGGCT
GCGAGTCTGCCAACACACAGGTCCTGCAGGTGTCTGAGGCCTGTGATGCCGTGTTCGTGGCTGGCAAGGA
GAGCCGGGGCGCCCGGGGGGTGCGAGTGGACTTCTGGTGGCGCCGGCTCCGCGCCTCGCTGCGGCTGACC
GTGTGGGCCCCCCTGCTACCGCTGCGTATCGAGCTCACCGACACCACCCTCGAGCAGGTCCGCGGCTGGA
GGGTACCTGGCCCTGCTGAAGGGCCTGCGGAACCCGCTGCAGAGGCGTCGGATGAGGCCGAGCGGCGCGC
CCGTGGCTGCCACCTGCAGTACCAGCGGGCCGGTGTGCGCTTCCTCGCCCCCTTCGCGGCCCACCCGCTG
GACGGCGGCCGCCGCCTCACGCACCTGCTTGGCCCCGACTGGCTGCTAGACGTGTCCCACCTCGTGGCGC
CACACGCCCGCGTGCTGGACTCGCGTGTAGCCTCTCTGGAGGGTGGCCGTGTCGTGGTGGGCCGGGAGCC
CGGTGTCACCTCCATTGAGGTGCGTTCCCCACTGTCTGACTCCATCCTGGGGGAGCAGGCGCTGGCTGTG
ACGGACGACAAGGTCTCAGTGCTGGAGCTGAGGGTGCAGCCAGTGATGGGCATCTCGCTGACCTTGAGCC
GGGGCACTGCCCACCCCGGGGAGGTCACAGCTACGTGCTGGGCACAGTCAGCCCTTCCCGCCCCAAAGCA
GGAGGTGGCCCTCTCCCTATGGCTGTCCTTCTCTGATCACACTGTGGCCCCAGCTGAGCTCTACGACCGC
CGTGACCTGGGACTGTCCGTCTCAGCCGAGGAGCCTGGTGCCATCCTGCCAGCTGAGGAGCAGGGTGCCC
AGCTCGGGGTGGTGGTGAGTGGGGCAGGCGCCGAGGGGCTGCCGCTGCATGTGGCTCTGCACCCGCCCGA
GCCCTGCCGCCGGGGCCGCCACCGTGTGCCTCTGGCCTCTGGCACCGCCTGGCTGGGGCTGCCCCCTGCC
TCCACTCCAGCCCCTGCTCTCCCATCCAGCCCTGCTTGGAGCCCACCAGCCACAGAAGCCACCATGGGTG
GTAAACGGCAGGTGGCAGGCAGTGTCGGGGGCAACACAGGTGTGAGGGGCAAGTTTGAGCGGGCAGAGGA
GGAGGCCAGGAAGGAGGAGACCGAAGCCAGGGAGGAGGAGGAGGAAGAGGAGGAGGAGATGGTCCCTGCC
CCTCAGCATGTCACTGAGCTAGAGCTGGGCATGTACGCCCTGCTGGGAGTCTTCTGCGTGGCCATCTTCA
TCTTCTTGGTCAATGGTGTGGTCTTCGTCCTGCGCTATCAGCGCAAAGAACCTCCCGACAGTGCCACTGA
CCCCACCTCCCCCCAGCCCCACAACTGGGTCTGGCTGGGCACTGACCAGGAGGAACTGAGCCGCCAGCTG
GACCGGCAGTCCCCTGGCCCGCCCAAGGGGGAGGGGAGCTGCCCCTGTGAGAGTGGGGGAGGAGGGGAGG
CCCCTACCCTGGCCCCTGGCCCTCCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGCCCGAAAGGAGGC
TGGGGGGCGGCGGAAGCGAGTAGAGTTTGTGACATTTGCGCCAGCCCCTCCAGCCCAGTCACCTGAGGAG
CCTGTAGGGGCCCCTGCTGTGCAGTCCATCCTTGTGGCAGGCGAGGAGGACATCCGCTGGGTGTGTGAGG
ACATGGGGCTGAAGGACCCTGAGGAGCTTCGCAACTACATGGAGAGGATCCGGGGCAGCTCCTGA

Translation (1024 aa):
MCARMAGRTTAAPRGPYGPWLCLLVALALDVVRVDCGQAPLDPVYLPAALELLDAPEHFRVQQVGHYPPA
NSSLSSRSETFLLLQPWPRAQPLLRASYPPFATQQVVPPRVTEPHQRPVPWDVRAVSVEAAVTPAEPYAR
VLFHLKGQDWPPGSGSLPCARLHATHPAGTAHQACRFQPSLGACVVELELPSHWFSQASTTRAELAYTLE
PAAEGPGGCGSGEENDPGEQALPVGGVELRPADPPQYQEVPLDEAVTLRVPDMPVRPGQLFSATLLLRHN
FTASLLTLRIKVKKGLHVTAARPAQPTLWTAKLDRFKGSRHHTTLITCHRAGLTEPDSSSPLELSEFLWV
DFVVENSTGGGVAVTRPVTWQLEYPGQAPEAEKDKMVWEILVSERDIRALIPLAKAEELVNTAPLTGVPQ
HVPVRLVTVDGGGALVEVTEHVGCESANTQVLQVSEACDAVFVAGKESRGARGVRVDFWWRRLRASLRLT
VWAPLLPLRIELTDTTLEQVRGWRVPGPAEGPAEPAAEASDEAERRARGCHLQYQRAGVRFLAPFAAHPL
DGGRRLTHLLGPDWLLDVSHLVAPHARVLDSRVASLEGGRVVVGREPGVTSIEVRSPLSDSILGEQALAV
TDDKVSVLELRVQPVMGISLTLSRGTAHPGEVTATCWAQSALPAPKQEVALSLWLSFSDHTVAPAELYDR
RDLGLSVSAEEPGAILPAEEQGAQLGVVVSGAGAEGLPLHVALHPPEPCRRGRHRVPLASGTAWLGLPPA
STPAPALPSSPAWSPPATEATMGGKRQVAGSVGGNTGVRGKFERAEEEARKEETEAREEEEEEEEEMVPA
PQHVTELELGMYALLGVFCVAIFIFLVNGVVFVLRYQRKEPPDSATDPTSPQPHNWVWLGTDQEELSRQL
DRQSPGPPKGEGSCPCESGGGGEAPTLAPGPPGGTTSSSSTLARKEAGGRRKRVEFVTFAPAPPAQSPEE
PVGAPAVQSILVAGEEDIRWVCEDMGLKDPEELRNYMERIRGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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