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Report for CCDS7174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7174.1 Public Homo sapiens 10 ITGB1 24 110 108 CCDS HistoryNCBI Gene:3688Re-query CCDS DB by CCDS ID:7174.1Re-query CCDS DB by GeneID:3688See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7174.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302278.8 ENSP00000303351.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302278.8Link to Ensembl Protein Viewer:ENSP00000303351.3Re-query CCDS DB by Nucleotide ID:ENST00000302278Re-query CCDS DB by Protein ID:ENSP00000303351
Original member Current member EBI ENST00000396033.6 ENSP00000379350.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396033.6Link to Ensembl Protein Viewer:ENSP00000379350.2Re-query CCDS DB by Nucleotide ID:ENST00000396033Re-query CCDS DB by Protein ID:ENSP00000379350
Original member Current member EBI ENST00000437302.6 ENSP00000398029.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437302.6Link to Ensembl Protein Viewer:ENSP00000398029.2Re-query CCDS DB by Nucleotide ID:ENST00000437302Re-query CCDS DB by Protein ID:ENSP00000398029
Original member Current member EBI ENST00000417122.7 ENSP00000404546.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417122.7Link to Ensembl Protein Viewer:ENSP00000404546.3Re-query CCDS DB by Nucleotide ID:ENST00000417122Re-query CCDS DB by Protein ID:ENSP00000404546
Original member Current member EBI ENST00000678989.1 ENSP00000502882.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678989.1Link to Ensembl Protein Viewer:ENSP00000502882.1Re-query CCDS DB by Nucleotide ID:ENST00000678989Re-query CCDS DB by Protein ID:ENSP00000502882
Original member Current member EBI ENST00000677999.1 ENSP00000503546.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677999.1Link to Ensembl Protein Viewer:ENSP00000503546.1Re-query CCDS DB by Nucleotide ID:ENST00000677999Re-query CCDS DB by Protein ID:ENSP00000503546
Original member Current member EBI ENST00000678943.1 ENSP00000503916.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678943.1Link to Ensembl Protein Viewer:ENSP00000503916.1Re-query CCDS DB by Nucleotide ID:ENST00000678943Re-query CCDS DB by Protein ID:ENSP00000503916
Original member Current member EBI ENST00000678701.1 ENSP00000504205.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678701.1Link to Ensembl Protein Viewer:ENSP00000504205.1Re-query CCDS DB by Nucleotide ID:ENST00000678701Re-query CCDS DB by Protein ID:ENSP00000504205
Original member Current member EBI ENST00000678952.1 ENSP00000504444.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678952.1Link to Ensembl Protein Viewer:ENSP00000504444.1Re-query CCDS DB by Nucleotide ID:ENST00000678952Re-query CCDS DB by Protein ID:ENSP00000504444
Original member Current member NCBI NM_002211.4 NP_002202.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002211.4Link to Protein Sequence:NP_002202.2Re-query CCDS DB by Nucleotide ID:NM_002211Re-query CCDS DB by Protein ID:NP_002202Link to BLAST:NP_002202.2
Original member Current member NCBI NM_133376.3 NP_596867.1 Accepted alive Link to Nucleotide Sequence:NM_133376.3Link to Protein Sequence:NP_596867.1Re-query CCDS DB by Nucleotide ID:NM_133376Re-query CCDS DB by Protein ID:NP_596867Link to BLAST:NP_596867.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002202.2 798 P05556-1 798 100% 0 0
NP_596867.1 798 P05556-1 798 100% 0 0

Chromosomal Locations for CCDS 7174.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 32901570 32901635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32908368 32908534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32910223 32910455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32911448 32911670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32911886 32912124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32919885 32920084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32920245 32920385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32922257 32922346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32922640 32922735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32923585 32923740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32925871 32926109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32928094 32928264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32929822 32930044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32932515 32932600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 32935492 32935558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGAATTTACAACCAATTTTCTGGATTGGACTGATCAGTTCAGTTTGCTGTGTGTTTGCTCAAACAGATG
AAAATAGATGTTTAAAAGCAAATGCCAAATCATGTGGAGAATGTATACAAGCAGGGCCAAATTGTGGGTG
GTGCACAAATTCAACATTTTTACAGGAAGGAATGCCTACTTCTGCACGATGTGATGATTTAGAAGCCTTA
AAAAAGAAGGGTTGCCCTCCAGATGACATAGAAAATCCCAGAGGCTCCAAAGATATAAAGAAAAATAAAA
ATGTAACCAACCGTAGCAAAGGAACAGCAGAGAAGCTCAAGCCAGAGGATATTACTCAGATCCAACCACA
GCAGTTGGTTTTGCGATTAAGATCAGGGGAGCCACAGACATTTACATTAAAATTCAAGAGAGCTGAAGAC
TATCCCATTGACCTCTACTACCTTATGGACCTGTCTTACTCAATGAAAGACGATTTGGAGAATGTAAAAA
GTCTTGGAACAGATCTGATGAATGAAATGAGGAGGATTACTTCGGACTTCAGAATTGGATTTGGCTCATT
TGTGGAAAAGACTGTGATGCCTTACATTAGCACAACACCAGCTAAGCTCAGGAACCCTTGCACAAGTGAA
CAGAACTGCACCAGCCCATTTAGCTACAAAAATGTGCTCAGTCTTACTAATAAAGGAGAAGTATTTAATG
AACTTGTTGGAAAACAGCGCATATCTGGAAATTTGGATTCTCCAGAAGGTGGTTTCGATGCCATCATGCA
AGTTGCAGTTTGTGGATCACTGATTGGCTGGAGGAATGTTACACGGCTGCTGGTGTTTTCCACAGATGCC
GGGTTTCACTTTGCTGGAGATGGGAAACTTGGTGGCATTGTTTTACCAAATGATGGACAATGTCACCTGG
AAAATAATATGTACACAATGAGCCATTATTATGATTATCCTTCTATTGCTCACCTTGTCCAGAAACTGAG
TGAAAATAATATTCAGACAATTTTTGCAGTTACTGAAGAATTTCAGCCTGTTTACAAGGAGCTGAAAAAC
TTGATCCCTAAGTCAGCAGTAGGAACATTATCTGCAAATTCTAGCAATGTAATTCAGTTGATCATTGATG
CATACAATTCCCTTTCCTCAGAAGTCATTTTGGAAAACGGCAAATTGTCAGAAGGCGTAACAATAAGTTA
CAAATCTTACTGCAAGAACGGGGTGAATGGAACAGGGGAAAATGGAAGAAAATGTTCCAATATTTCCATT
GGAGATGAGGTTCAATTTGAAATTAGCATAACTTCAAATAAGTGTCCAAAAAAGGATTCTGACAGCTTTA
AAATTAGGCCTCTGGGCTTTACGGAGGAAGTAGAGGTTATTCTTCAGTACATCTGTGAATGTGAATGCCA
AAGCGAAGGCATCCCTGAAAGTCCCAAGTGTCATGAAGGAAATGGGACATTTGAGTGTGGCGCGTGCAGG
TGCAATGAAGGGCGTGTTGGTAGACATTGTGAATGCAGCACAGATGAAGTTAACAGTGAAGACATGGATG
CTTACTGCAGGAAAGAAAACAGTTCAGAAATCTGCAGTAACAATGGAGAGTGCGTCTGCGGACAGTGTGT
TTGTAGGAAGAGGGATAATACAAATGAAATTTATTCTGGCAAATTCTGCGAGTGTGATAATTTCAACTGT
GATAGATCCAATGGCTTAATTTGTGGAGGAAATGGTGTTTGCAAGTGTCGTGTGTGTGAGTGCAACCCCA
ACTACACTGGCAGTGCATGTGACTGTTCTTTGGATACTAGTACTTGTGAAGCCAGCAACGGACAGATCTG
CAATGGCCGGGGCATCTGCGAGTGTGGTGTCTGTAAGTGTACAGATCCGAAGTTTCAAGGGCAAACGTGT
GAGATGTGTCAGACCTGCCTTGGTGTCTGTGCTGAGCATAAAGAATGTGTTCAGTGCAGAGCCTTCAATA
AAGGAGAAAAGAAAGACACATGCACACAGGAATGTTCCTATTTTAACATTACCAAGGTAGAAAGTCGGGA
CAAATTACCCCAGCCGGTCCAACCTGATCCTGTGTCCCATTGTAAGGAGAAGGATGTTGACGACTGTTGG
TTCTATTTTACGTATTCAGTGAATGGGAACAACGAGGTCATGGTTCATGTTGTGGAGAATCCAGAGTGTC
CCACTGGTCCAGACATCATTCCAATTGTAGCTGGTGTGGTTGCTGGAATTGTTCTTATTGGCCTTGCATT
ACTGCTGATATGGAAGCTTTTAATGATAATTCATGACAGAAGGGAGTTTGCTAAATTTGAAAAGGAGAAA
ATGAATGCCAAATGGGACACGGGTGAAAATCCTATTTATAAGAGTGCCGTAACAACTGTGGTCAATCCGA
AGTATGAGGGAAAATGA

Translation (798 aa):
MNLQPIFWIGLISSVCCVFAQTDENRCLKANAKSCGECIQAGPNCGWCTNSTFLQEGMPTSARCDDLEAL
KKKGCPPDDIENPRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAED
YPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSE
QNCTSPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDA
GFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKN
LIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISI
GDEVQFEISITSNKCPKKDSDSFKIRPLGFTEEVEVILQYICECECQSEGIPESPKCHEGNGTFECGACR
CNEGRVGRHCECSTDEVNSEDMDAYCRKENSSEICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNC
DRSNGLICGGNGVCKCRVCECNPNYTGSACDCSLDTSTCEASNGQICNGRGICECGVCKCTDPKFQGQTC
EMCQTCLGVCAEHKECVQCRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPVSHCKEKDVDDCW
FYFTYSVNGNNEVMVHVVENPECPTGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEK
MNAKWDTGENPIYKSAVTTVVNPKYEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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