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Report for CCDS4686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4686.1 Public Homo sapiens 6 NRM 24 110 108 CCDS HistoryNCBI Gene:11270Re-query CCDS DB by CCDS ID:4686.1Re-query CCDS DB by GeneID:11270See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4686.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259953.8 ENSP00000259953.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000259953.8Link to Ensembl Protein Viewer:ENSP00000259953.4Re-query CCDS DB by Nucleotide ID:ENST00000259953Re-query CCDS DB by Protein ID:ENSP00000259953
Original member Current member EBI ENST00000376421.7 ENSP00000365603.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376421.7Link to Ensembl Protein Viewer:ENSP00000365603.5Re-query CCDS DB by Nucleotide ID:ENST00000376421Re-query CCDS DB by Protein ID:ENSP00000365603
Original member Current member NCBI NM_001384369.1 NP_001371298.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384369.1Link to Protein Sequence:NP_001371298.1Re-query CCDS DB by Nucleotide ID:NM_001384369Re-query CCDS DB by Protein ID:NP_001371298Link to BLAST:NP_001371298.1
Original member Current member NCBI NM_007243.3 NP_009174.1 Accepted alive Link to Nucleotide Sequence:NM_007243.3Link to Protein Sequence:NP_009174.1Re-query CCDS DB by Nucleotide ID:NM_007243Re-query CCDS DB by Protein ID:NP_009174Link to BLAST:NP_009174.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371298.1 262 Q8IXM6-1 262 100% 0 0
NP_009174.1 262 Q8IXM6-1 262 100% 0 0

Chromosomal Locations for CCDS 4686.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30688661 30688942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30689276 30689452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30690047 30690243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30690842 30690974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGCCCCTGCACTGCTCCTGATCCCTGCTGCCCTCGCCTCTTTCATCCTGGCCTTTGGCACCGGAGTGG
AGTTCGTGCGCTTTACCTCCCTTCGGCCACTTCTTGGAGGGATCCCGGAGTCTGGTGGTCCGGATGCCCG
CCAGGGATGGCTGGCTGCCCTGCAGGACCGCAGCATCCTTGCCCCCCTGGCATGGGATCTGGGGCTCCTG
CTTCTATTTGTTGGGCAGCACAGCCTCATGGCAGCTGAAAGAGTGAAGGCATGGACATCCCGGTACTTTG
GGGTCCTTCAGAGGTCACTGTATGTGGCCTGCACTGCCCTGGCCTTGCAGCTGGTGATGCGGTACTGGGA
GCCCATACCCAAAGGCCCTGTGTTGTGGGAGGCTCGGGCTGAGCCATGGGCCACCTGGGTGCCGCTCCTC
TGCTTTGTGCTCCATGTCATCTCCTGGCTCCTCATCTTTAGCATCCTTCTCGTCTTTGACTATGCTGAGC
TCATGGGCCTCAAACAGGTATACTACCATGTGCTGGGGCTGGGCGAGCCTCTGGCCCTGAAGTCTCCCCG
GGCTCTCAGACTCTTCTCCCACCTGCGCCACCCAGTGTGTGTGGAGCTGCTGACAGTGCTGTGGGTGGTG
CCTACCCTGGGCACGGACCGTCTCCTCCTTGCTTTCCTCCTTACCCTCTACCTGGGCCTGGCTCACGGGC
TTGATCAGCAAGACCTCCGCTACCTCCGGGCCCAGCTACAAAGAAAACTCCACCTGCTCTCTCGGCCCCA
GGATGGGGAGGCAGAGTGA

Translation (262 aa):
MAPALLLIPAALASFILAFGTGVEFVRFTSLRPLLGGIPESGGPDARQGWLAALQDRSILAPLAWDLGLL
LLFVGQHSLMAAERVKAWTSRYFGVLQRSLYVACTALALQLVMRYWEPIPKGPVLWEARAEPWATWVPLL
CFVLHVISWLLIFSILLVFDYAELMGLKQVYYHVLGLGEPLALKSPRALRLFSHLRHPVCVELLTVLWVV
PTLGTDRLLLAFLLTLYLGLAHGLDQQDLRYLRAQLQRKLHLLSRPQDGEAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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