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Report for CCDS31452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31452.1 Public Homo sapiens 11 PAX6 24 110 108 CCDS HistoryNCBI Gene:5080Re-query CCDS DB by CCDS ID:31452.1Re-query CCDS DB by GeneID:5080See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31452.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379107.7 ENSP00000368401.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379107.7Link to Ensembl Protein Viewer:ENSP00000368401.2Re-query CCDS DB by Nucleotide ID:ENST00000379107Re-query CCDS DB by Protein ID:ENSP00000368401
Original member Current member EBI ENST00000379129.7 ENSP00000368424.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379129.7Link to Ensembl Protein Viewer:ENSP00000368424.2Re-query CCDS DB by Nucleotide ID:ENST00000379129Re-query CCDS DB by Protein ID:ENSP00000368424
Original member Current member EBI ENST00000419022.6 ENSP00000404100.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419022.6Link to Ensembl Protein Viewer:ENSP00000404100.1Re-query CCDS DB by Nucleotide ID:ENST00000419022Re-query CCDS DB by Protein ID:ENSP00000404100
Original member Current member EBI ENST00000606377.7 ENSP00000480026.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000606377.7Link to Ensembl Protein Viewer:ENSP00000480026.1Re-query CCDS DB by Nucleotide ID:ENST00000606377Re-query CCDS DB by Protein ID:ENSP00000480026
Original member Current member EBI ENST00000640975.1 ENSP00000491872.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640975.1Link to Ensembl Protein Viewer:ENSP00000491872.1Re-query CCDS DB by Nucleotide ID:ENST00000640975Re-query CCDS DB by Protein ID:ENSP00000491872
Original member Current member EBI ENST00000640368.2 ENSP00000492024.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000640368.2Link to Ensembl Protein Viewer:ENSP00000492024.1Re-query CCDS DB by Nucleotide ID:ENST00000640368Re-query CCDS DB by Protein ID:ENSP00000492024
Original member Current member EBI ENST00000638914.3 ENSP00000492315.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638914.3Link to Ensembl Protein Viewer:ENSP00000492315.2Re-query CCDS DB by Nucleotide ID:ENST00000638914Re-query CCDS DB by Protein ID:ENSP00000492315
Original member Current member EBI ENST00000639409.1 ENSP00000492476.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639409.1Link to Ensembl Protein Viewer:ENSP00000492476.1Re-query CCDS DB by Nucleotide ID:ENST00000639409Re-query CCDS DB by Protein ID:ENSP00000492476
Original member Current member NCBI NM_001258462.3 NP_001245391.1 Accepted alive Link to Nucleotide Sequence:NM_001258462.3Link to Protein Sequence:NP_001245391.1Re-query CCDS DB by Nucleotide ID:NM_001258462Re-query CCDS DB by Protein ID:NP_001245391Link to BLAST:NP_001245391.1
Original member Current member NCBI NM_001258463.2 NP_001245392.1 Accepted alive Link to Nucleotide Sequence:NM_001258463.2Link to Protein Sequence:NP_001245392.1Re-query CCDS DB by Nucleotide ID:NM_001258463Re-query CCDS DB by Protein ID:NP_001245392Link to BLAST:NP_001245392.1
Original member Current member NCBI NM_001310158.2 NP_001297087.1 Accepted alive Link to Nucleotide Sequence:NM_001310158.2Link to Protein Sequence:NP_001297087.1Re-query CCDS DB by Nucleotide ID:NM_001310158Re-query CCDS DB by Protein ID:NP_001297087Link to BLAST:NP_001297087.1
Original member Current member NCBI NM_001368892.2 NP_001355821.1 Accepted alive Link to Nucleotide Sequence:NM_001368892.2Link to Protein Sequence:NP_001355821.1Re-query CCDS DB by Nucleotide ID:NM_001368892Re-query CCDS DB by Protein ID:NP_001355821Link to BLAST:NP_001355821.1
Original member Current member NCBI NM_001368893.2 NP_001355822.1 Accepted alive Link to Nucleotide Sequence:NM_001368893.2Link to Protein Sequence:NP_001355822.1Re-query CCDS DB by Nucleotide ID:NM_001368893Re-query CCDS DB by Protein ID:NP_001355822Link to BLAST:NP_001355822.1
Original member Current member NCBI NM_001368894.2 NP_001355823.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001368894.2Link to Protein Sequence:NP_001355823.1Re-query CCDS DB by Nucleotide ID:NM_001368894Re-query CCDS DB by Protein ID:NP_001355823Link to BLAST:NP_001355823.1
Original member Current member NCBI NM_001604.6 NP_001595.2 Accepted alive Link to Nucleotide Sequence:NM_001604.6Link to Protein Sequence:NP_001595.2Re-query CCDS DB by Nucleotide ID:NM_001604Re-query CCDS DB by Protein ID:NP_001595Link to BLAST:NP_001595.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245391.1 436 P26367-2 436 100% 0 0
NP_001245392.1 436 P26367-2 436 100% 0 0
NP_001297087.1 436 P26367-2 436 100% 0 0
NP_001355821.1 436 P26367-2 436 100% 0 0
NP_001355822.1 436 P26367-2 436 100% 0 0
NP_001355823.1 436 P26367-2 436 100% 0 0
NP_001595.2 436 P26367-2 436 100% 0 0

Chromosomal Locations for CCDS 31452.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 31789934 31790019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31790710 31790860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31793438 31793553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31793652 31793802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31794032 31794114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31794630 31794788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31800691 31800856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31801561 31801776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31801871 31801912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31802704 31802834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31806402 31806411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGCAGAACAGTCACAGCGGAGTGAATCAGCTCGGTGGTGTCTTTGTCAACGGGCGGCCACTGCCGGACT
CCACCCGGCAGAAGATTGTAGAGCTAGCTCACAGCGGGGCCCGGCCGTGCGACATTTCCCGAATTCTGCA
GACCCATGCAGATGCAAAAGTCCAAGTGCTGGACAATCAAAACGTGTCCAACGGATGTGTGAGTAAAATT
CTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCAATCGGTGGTAGTAAACCGAGAGTAGCGA
CTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAGCGGGAGTGCCCGTCCATCTTTGCTTGGGAAATCCG
AGACAGATTACTGTCCGAGGGGGTCTGTACCAACGATAACATACCAAGCGTGTCATCAATAAACAGAGTT
CTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGTTGA
ACGGGCAGACCGGAAGCTGGGGCACCCGCCCTGGTTGGTATCCGGGGACTTCGGTGCCAGGGCAACCTAC
GCAAGATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAATACCAACTCCATCAGTTCCAACGGAGAAGAT
TCAGATGAGGCTCAAATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGAAATAGAACATCCTTTACCCAAG
AGCAAATTGAGGCCCTGGAGAAAGAGTTTGAGAGAACCCATTATCCAGATGTGTTTGCCCGAGAAAGACT
AGCAGCCAAAATAGATCTACCTGAAGCAAGAATACAGGTATGGTTTTCTAATCGAAGGGCCAAATGGAGA
AGAGAAGAAAAACTGAGGAATCAGAGAAGACAGGCCAGCAACACACCTAGTCATATTCCTATCAGCAGTA
GTTTCAGCACCAGTGTCTACCAACCAATTCCACAACCCACCACACCGGTTTCCTCCTTCACATCTGGCTC
CATGTTGGGCCGAACAGACACAGCCCTCACAAACACCTACAGCGCTCTGCCGCCTATGCCCAGCTTCACC
ATGGCAAATAACCTGCCTATGCAACCCCCAGTCCCCAGCCAGACCTCCTCATACTCCTGCATGCTGCCCA
CCAGCCCTTCGGTGAATGGGCGGAGTTATGATACCTACACCCCCCCACATATGCAGACACACATGAACAG
TCAGCCAATGGGCACCTCGGGCACCACTTCAACAGGACTCATTTCCCCTGGTGTGTCAGTTCCAGTTCAA
GTTCCCGGAAGTGAACCTGATATGTCTCAATACTGGCCAAGATTACAGTAA

Translation (436 aa):
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCVSKI
LGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV
LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGED
SDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR
REEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFT
MANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ
VPGSEPDMSQYWPRLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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