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Report for CCDS31970.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31970.2 Public Homo sapiens 13 RUBCNL 24 110 108 CCDS HistoryNCBI Gene:80183Re-query CCDS DB by CCDS ID:31970.2Re-query CCDS DB by GeneID:80183See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31970.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389908.7 ENSP00000374558.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389908.7Link to Ensembl Protein Viewer:ENSP00000374558.3Re-query CCDS DB by Nucleotide ID:ENST00000389908Re-query CCDS DB by Protein ID:ENSP00000374558
Original member Current member EBI ENST00000429979.6 ENSP00000396935.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429979.6Link to Ensembl Protein Viewer:ENSP00000396935.1Re-query CCDS DB by Nucleotide ID:ENST00000429979Re-query CCDS DB by Protein ID:ENSP00000396935
Original member Current member EBI ENST00000676307.1 ENSP00000502015.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676307.1Link to Ensembl Protein Viewer:ENSP00000502015.1Re-query CCDS DB by Nucleotide ID:ENST00000676307Re-query CCDS DB by Protein ID:ENSP00000502015
Original member Current member EBI ENST00000676114.1 ENSP00000502252.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676114.1Link to Ensembl Protein Viewer:ENSP00000502252.1Re-query CCDS DB by Nucleotide ID:ENST00000676114Re-query CCDS DB by Protein ID:ENSP00000502252
Original member Current member NCBI NM_001286761.2 NP_001273690.1 Accepted alive Link to Nucleotide Sequence:NM_001286761.2Link to Protein Sequence:NP_001273690.1Re-query CCDS DB by Nucleotide ID:NM_001286761Re-query CCDS DB by Protein ID:NP_001273690Link to BLAST:NP_001273690.1
Original member Current member NCBI NM_001349772.2 NP_001336701.1 Accepted alive Link to Nucleotide Sequence:NM_001349772.2Link to Protein Sequence:NP_001336701.1Re-query CCDS DB by Nucleotide ID:NM_001349772Re-query CCDS DB by Protein ID:NP_001336701Link to BLAST:NP_001336701.1
Original member Current member NCBI NM_025113.5 NP_079389.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025113.5Link to Protein Sequence:NP_079389.2Re-query CCDS DB by Nucleotide ID:NM_025113Re-query CCDS DB by Protein ID:NP_079389Link to BLAST:NP_079389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273690.1 662 Q9H714-5 662 100% 0 0
NP_001336701.1 662 Q9H714-5 662 100% 0 0
NP_079389.2 662 Q9H714-5 662 100% 0 0

Chromosomal Locations for CCDS 31970.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 46343385 46343497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46344741 46344831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46345447 46345600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46349286 46349347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46350113 46350351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46356432 46356496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46359486 46359631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46361441 46361573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46362538 46362598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46363115 46363213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46368042 46368249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46368733 46368815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46371941 46372475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGGTGTCACAATCTACAGTCAGGCAGGATTCTCCTGTGGAGCCCTGGGAAGGGATCAGCGATCACTCTG
GCATTATTGATGGTTCGCCCAGACTCCTGAACACTGACCATCCTCCTTGCCAATTAGACATCAGGCTCAT
GAGGCACAAAGCTGTCTGGATTAACCCCCAGGATGTGCAGCAACAGCCGCAGGACTTGCAATCTCAGGTG
CCAGCAGCAGGGAACAGTGGGACCCATTTTGTGACAGATGCTGCCTCTCCCTCAGGCCCTTCACCTTCGT
GCCTCGGGGACTCCCTGGCAGAGACAACGTTGTCTGAGGATACCACAGACTCCGTTGGCAGCGCTTCTCC
CCATGGCTCGAGTGAAAAGAGTAGCAGCTTCTCTCTGTCCTCAACAGAGGTACACATGGTCCGCCCAGGA
TACTCTCATCGGGTGTCTCTGCCCACAAGCCCTGGGATTTTGGCCACCTCCCCATATCCTGAGACTGACA
GTGCTTTTTTTGAGCCTTCCCATCTGACATCTGCTGCTGATGAAGGTGCTGTTCAAGTCAGTAGAAGAAC
CATTTCTTCGAATTCCTTCTCACCAGAGGTATTTGTGCTGCCTGTTGATGTAGAAAAGGAAAATGCCCAC
TTTTATGTTGCAGATATGATTATATCAGCAATGGAGAAAATGAAGTGTAACATTCTGAGTCAACAGCAGA
CAGAGAGCTGGAGTAAAGAAGTCAGTGGGTTACTTGGGAGTGATCAGCCTGACTCTGAAATGACTTTTGA
TACCAACATAAAGCAAGAGTCTGGGTCTTCTACTTCTTCATACAGTGGCTATGAAGGTTGTGCTGTGTTA
CAGGTCAGCCCAGTGACTGAAACACGTACTTACCATGATGTGAAAGAGATTTGCAAATGCGATGTTGATG
AATTTGTTATTTTAGAGCTTGGAGATTTTAATGATATCACAGAAACCTGTAGCTGTTCCTGCAGCTCCTC
TAAGAGTGTCACTTATGAGCCAGACTTCAATTCTGCAGAACTATTAGCCAAAGAGCTGTACCGCGTGTTC
CAGAAGTGCTGGATACTGTCAGTAGTTAATTCTCAGCTGGCAGGTTCCCTGAGTGCAGCTGGCTCGATAG
TCGTAAATGAAGAGTGTGTCCGAAAAGACTTTGAATCCAGTATGAATGTAGTACAGGAAATTAAATTTAA
GTCTAGGATCAGAGGGACTGAAGACTGGGCTCCTCCTAGATTTCAAATCATATTTAATATTCATCCACCA
CTCAAGAGGGACCTTGTGGTGGCAGCCCAGAATTTTTTCTGTGCCGGCTGTGGAACTCCAGTAGAGCCTA
AGTTTGTGAAGCGGCTCCGGTACTGCGAATACCTAGGGAAGTATTTCTGTGACTGCTGCCACTCATATGC
AGAGTCGTGCATCCCTGCCCGAATCCTGATGATGTGGGACTTCAAGAAGTACTACGTCAGCAATTTCTCC
AAACAGCTGCTCGACAGCATATGGCACCAGCCCATTTTCAATTTGCTGAGCATCGGCCAAAGCCTGTATG
CGAAAGCCAAGGAGCTGGACAGAGTGAAGGAAATTCAGGAGCAGCTCTTCCATATCAAGAAGCTGTTGAA
GACCTGTAGGTTTGCTAACAGTGCATTAAAGGAGTTCGAGCAGGTGCCGGGACACTTGACTGATGAGCTC
CACCTGTTCTCCCTTGAGGACCTGGTCAGGATCAAGAAAGGGCTGCTGGCACCCTTACTCAAGGACATTC
TGAAAGCTTCCCTTGCACATGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTTTATTTGTGAATTTTG
CCAGAATACGACTGTCATCTTCCCATTTCAGACAGCAACATGTAGAAGATGTTCAGCGTGCAGGGCTTGC
TTTCACAAACAGTGCTTCCAGTCCTCCGAGTGCCCCCGGTGTGCGAGGATCACAGCGAGGAGAAAACTTC
TGGAAAGTGTGGCCTCTGCAGCAACATGA

Translation (662 aa):
MVSQSTVRQDSPVEPWEGISDHSGIIDGSPRLLNTDHPPCQLDIRLMRHKAVWINPQDVQQQPQDLQSQV
PAAGNSGTHFVTDAASPSGPSPSCLGDSLAETTLSEDTTDSVGSASPHGSSEKSSSFSLSSTEVHMVRPG
YSHRVSLPTSPGILATSPYPETDSAFFEPSHLTSAADEGAVQVSRRTISSNSFSPEVFVLPVDVEKENAH
FYVADMIISAMEKMKCNILSQQQTESWSKEVSGLLGSDQPDSEMTFDTNIKQESGSSTSSYSGYEGCAVL
QVSPVTETRTYHDVKEICKCDVDEFVILELGDFNDITETCSCSCSSSKSVTYEPDFNSAELLAKELYRVF
QKCWILSVVNSQLAGSLSAAGSIVVNEECVRKDFESSMNVVQEIKFKSRIRGTEDWAPPRFQIIFNIHPP
LKRDLVVAAQNFFCAGCGTPVEPKFVKRLRYCEYLGKYFCDCCHSYAESCIPARILMMWDFKKYYVSNFS
KQLLDSIWHQPIFNLLSIGQSLYAKAKELDRVKEIQEQLFHIKKLLKTCRFANSALKEFEQVPGHLTDEL
HLFSLEDLVRIKKGLLAPLLKDILKASLAHVAGCELCQGKGFICEFCQNTTVIFPFQTATCRRCSACRAC
FHKQCFQSSECPRCARITARRKLLESVASAAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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