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Report for CCDS52252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52252.1 Public Mus musculus 7 Kcnc1 23 108 98 CCDS HistoryNCBI Gene:16502Re-query CCDS DB by CCDS ID:52252.1Re-query CCDS DB by GeneID:16502See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160433.2 ENSMUSP00000124938.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160433.2Link to Ensembl Protein Viewer:ENSMUSP00000124938.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160433Re-query CCDS DB by Protein ID:ENSMUSP00000124938
Original member Current member NCBI NM_001112739.2 NP_001106210.1 Accepted alive Link to Nucleotide Sequence:NM_001112739.2Link to Protein Sequence:NP_001106210.1Re-query CCDS DB by Nucleotide ID:NM_001112739Re-query CCDS DB by Protein ID:NP_001106210Link to BLAST:NP_001106210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106210.1 585 P15388-3 585 100% 0 0

Chromosomal Locations for CCDS 52252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46397678 46398247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46427346 46428279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46435158 46435346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46437272 46437336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGGGCCAAGGGGACGAGAGCGAGCGCATCGTGATCAACGTGGGCGGCACGCGCCACCAGACGTACCGCT
CGACGCTGCGCACGCTGCCCGGCACGCGGCTTGCCTGGCTGGCAGAGCCGGACGCCCACAGCCACTTCGA
CTATGACCCGCGTGCCGACGAGTTCTTCTTCGACCGCCACCCGGGCGTCTTCGCTCACATCCTGAACTAT
TACCGCACCGGCAAGCTTCACTGCCCGGCCGACGTGTGCGGGCCGCTCTACGAGGAGGAGCTGGCCTTCT
GGGGCATCGACGAGACGGACGTGGAGCCCTGCTGCTGGATGACCTATCGCCAGCACCGAGACGCTGAGGA
GGCGCTGGACAGCTTTGGCGGTGCGCCCTTGGACAACAGCGCCGACGACGCGGACGCCGACGGCCCCGGC
GACTCGGGCGACGGCGAGGACGAGCTGGAGATGACCAAGAGATTGGCACTCAGTGACTCCCCAGATGGCC
GGCCTGGCGGCTTCTGGCGCCGCTGGCAACCGCGCATCTGGGCGCTGTTCGAGGACCCCTACTCATCCCG
CTACGCGCGGTATGTGGCCTTTGCCTCCCTCTTCTTCATCCTGGTCTCCATCACAACCTTCTGTCTGGAG
ACTCACGAGCGCTTCAACCCCATCGTGAACAAGACCGAAATCGAGAACGTTCGAAACGGCACCCAAGTGC
GGTACTACCGGGAAGCAGAGACGGAGGCCTTCCTCACCTACATCGAGGGCGTCTGCGTGGTCTGGTTCAC
CTTCGAGTTCCTCATGCGTGTCGTCTTCTGCCCCAACAAGGTGGAATTCATCAAGAACTCCCTCAATATC
ATTGACTTTGTGGCCATTCTCCCCTTCTACCTGGAGGTGGGCCTAAGCGGCCTGTCCTCAAAAGCCGCCA
AGGACGTTCTGGGCTTCCTGCGCGTCGTCCGCTTCGTGCGCATCCTGCGCATCTTCAAGCTGACCCGCCA
CTTCGTGGGCCTGAGGGTCCTGGGCCACACGCTCCGTGCCAGCACCAACGAGTTCCTGCTGCTTATCATC
TTCCTGGCCCTGGGAGTGCTCATCTTTGCCACCATGATCTACTACGCCGAGAGGATAGGGGCACAGCCCA
ATGACCCCAGCGCCAGCGAACACACACACTTTAAAAACATCCCCATCGGCTTCTGGTGGGCTGTGGTCAC
CATGACGACACTGGGCTATGGAGACATGTATCCCCAGACGTGGTCTGGAATGCTGGTGGGAGCCTTGTGT
GCTCTGGCTGGTGTGCTGACCATTGCCATGCCGGTGCCTGTCATCGTGAACAATTTTGGGATGTACTACT
CTTTAGCCATGGCTAAGCAGAAACTACCAAAGAAAAAAAAGAAGCATATTCCGCGGCCACCACAGCTGGG
ATCTCCCAATTATTGTAAATCTGTCGTAAACTCTCCACACCACAGTACTCAGAGTGACACATGCCCGCTG
GCCCAGGAAGAAATTTTAGAAATTAACAGAGCAGATTCCAAACTGAATGGGGAGGTGGCGAAGGCCGCGC
TGGCGAACGAAGACTGCCCCCACATAGACCAGGCCCTCACTCCCGATGAGGGCCTGCCCTTTACCCGCTC
GGGCACCCGCGAGAGATACGGACCCTGCTTCCTCTTATCAACCGGGGAGTACGCGTGCCCACCTGGTGGA
GGAATGAGAAAGGATCTTTGCAAAGAAAGCCCTGTCATTGCTAAGTATATGCCGACAGAGGCTGTGAGAG
TGACTTGA

Translation (585 aa):
MGQGDESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNY
YRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPG
DSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYSSRYARYVAFASLFFILVSITTFCLE
THERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVVFCPNKVEFIKNSLNI
IDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLII
FLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALC
ALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKKKHIPRPPQLGSPNYCKSVVNSPHHSTQSDTCPL
AQEEILEINRADSKLNGEVAKAALANEDCPHIDQALTPDEGLPFTRSGTRERYGPCFLLSTGEYACPPGG
GMRKDLCKESPVIAKYMPTEAVRVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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