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Report for CCDS12470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12470.1 Public Homo sapiens 19 UPK1A 24 110 108 CCDS HistoryNCBI Gene:11045Re-query CCDS DB by CCDS ID:12470.1Re-query CCDS DB by GeneID:11045See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222275.3 ENSP00000222275.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222275.3Link to Ensembl Protein Viewer:ENSP00000222275.2Re-query CCDS DB by Nucleotide ID:ENST00000222275Re-query CCDS DB by Protein ID:ENSP00000222275
Original member Current member NCBI NM_007000.4 NP_008931.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007000.4Link to Protein Sequence:NP_008931.1Re-query CCDS DB by Nucleotide ID:NM_007000Re-query CCDS DB by Protein ID:NP_008931Link to BLAST:NP_008931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008931.1 258 O00322-1 258 100% 0 0

Chromosomal Locations for CCDS 12470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35666813 35666896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35668454 35668654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35673232 35673306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35673438 35673545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35675840 35676019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35677812 35677895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35677975 35678019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGCGTCTGCGGCAGCAGCGGAGGCCGAGAAGGGATCTCCAGTTGTGGTGGGCCTGCTAGTTGTGGGCA
ATATCATTATTCTGCTGTCAGGCCTGTCCCTGTTTGCTGAGACCATATGGGTGACAGCCGACCAGTACCG
TGTATACCCACTGATGGGAGTCTCAGGCAAGGATGACGTCTTCGCTGGTGCCTGGATTGCCATCTTCTGC
GGCTTCTCCTTCTTCATGGTAGCCAGTTTTGGTGTGGGTGCCGCACTCTGCCGCCGCCGGTCCATGGTCC
TCACGTACCTGGTGCTCATGCTCATCGTCTACATCTTCGAGTGCGCCTCCTGCATCACGTCCTACACCCA
CCGTGACTACATGGTGTCCAACCCATCCCTGATCACCAAGCAGATGCTGACCTTCTACAGCGCGGACACC
GACCAGGGCCAGGAGCTGACCCGCCTCTGGGACCGCGTCATGATTGAGCAAGAATGCTGTGGCACATCTG
GTCCCATGGACTGGGTGAACTTCACGTCAGCCTTCCGGGCGGCCACTCCGGAGGTGGTGTTCCCCTGGCC
CCCACTGTGCTGTCGCCGGACGGGAAACTTCATCCCCCTCAACGAGGAGGGCTGCCGCCTGGGGCACATG
GACTACCTGTTCACCAAGGGCTGCTTCGAACACATCGGCCACGCCATCGACAGCTACACGTGGGGTATCT
CGTGGTTTGGGTTTGCCATCCTGATGTGGACGCTCCCGGTCATGCTGATAGCCATGTATTTCTACACCAT
GCTCTGA

Translation (258 aa):
MASAAAAEAEKGSPVVVGLLVVGNIIILLSGLSLFAETIWVTADQYRVYPLMGVSGKDDVFAGAWIAIFC
GFSFFMVASFGVGAALCRRRSMVLTYLVLMLIVYIFECASCITSYTHRDYMVSNPSLITKQMLTFYSADT
DQGQELTRLWDRVMIEQECCGTSGPMDWVNFTSAFRAATPEVVFPWPPLCCRRTGNFIPLNEEGCRLGHM
DYLFTKGCFEHIGHAIDSYTWGISWFGFAILMWTLPVMLIAMYFYTML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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